mRNA_Ecto-sp13_S_contig10168.194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI) HSP 1 Score: 521 bits (1342), Expect = 3.890e-184 Identity = 256/268 (95.52%), Postives = 264/268 (98.51%), Query Frame = 1 Query: 1 MAQQRMRRKQPRPGRRVGMVQAVVAVVVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKTSE 804 MAQQ+MRRKQPRPGRRVG+VQ VVAV VGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKP+ELGTLWSRSTIATSDFSLEWKFRISG EKVKYGDTIALVIAPMKYKAGQ+GRFFGIDEKFTGLV+VANTNRQLLN+DKLPGEPMGRHRDVSVIANNGTRN+GNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARN GRWRRCST+AHLDMPADWASKSNVGIIAKTSE Sbjct: 1 MAQQQMRRKQPRPGRRVGLVQVVVAVAVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPQELGTLWSRSTIATSDFSLEWKFRISGTEKVKYGDTIALVIAPMKYKAGQDGRFFGIDEKFTGLVVVANTNRQLLNRDKLPGEPMGRHRDVSVIANNGTRNYGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNAGRWRRCSTIAHLDMPADWASKSNVGIIAKTSE 268
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.490e-52 Identity = 98/221 (44.34%), Postives = 131/221 (59.28%), Query Frame = 1 Query: 130 QLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIA 792 + S PF+ HD G R +P + G QSFVRLTPD P G LWS+ + T FSLEWKFRISG ++ G+ + L I +EG FG+D FTG+ IV +T R E RHRDVSV+ ++G R + +L GC ANVR+ E RDDFNV+++TR+R V N +++DARNTGRWRRC TM +D+P WA ++ G++A Sbjct: 79 EASFTSPFNSHDESGQRFVPNWLHGGDALTKQSFVRLTPDTPFASGYLWSKKPLGTDVFSLEWKFRISGLQETGAGEHLGLWITDQARP--REGDVFGMDAAFTGIGIVVDTKRN---------EGDNRHRDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIR--VNENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLA 286
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA) HSP 1 Score: 183 bits (465), Expect = 4.720e-52 Identity = 101/237 (42.62%), Postives = 149/237 (62.87%), Query Frame = 1 Query: 109 VSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMG-RHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDA--RNTGRWRRCST--MAHLDMPAD-WASKSNVGIIAKTS 801 VS + +LS PF HDH+G R +P++E +G + QSF+R+TPDKP +LG +WSR+T+ + DFS+ WKFRISG + +GD +AL I A EG + FTG+++V +TN P + G H DVS++ N+G+R + + +LEGC A +RF E RDDFNV++++R+R+K T +EVD RNTGRWRRC+T +A +PA W ++VG++A T+ Sbjct: 4 VSANVIDKLSFQAPFLAHDHRGMRFVPHWEISGDAIVKQSFLRVTPDKPHQLGHVWSRTTLDSDDFSVIWKFRISGRQSETFGDFLALSITTAPRYA--EGDAYRQKADFTGVMVVVDTN---------PNDKAGANHFDVSIVYNDGSR--ADAVQNLEGCIAPLRFHEGRDDFNVLKASRLRIKYTAATRMLEVDMDPRNTGRWRRCATANLAKRGLPAGGWPRTAHVGLVAATT 227
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.020e-39 Identity = 89/258 (34.50%), Postives = 141/258 (54.65%), Query Frame = 1 Query: 34 RPGRRVGMVQAVVAVVVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPY-FEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKTSE 804 R GR + M + V A L A + +L+Q S P+ D G R++ ++ G ++ QSFVRLTPD+ + G +WSR ++ T FS KFRISG K +GD +AL + Y EG G E+FTG ++ +T + E + RHRDVSVI N+G + ++D LEGC A++R+ E R DF+V +R ++ V G + +++D +N G+++ C+ + L DWA +++G+ A T + Sbjct: 14 RGGRELTMFRVVAATAAFLLALASTSADKLEQH-SFEPPYTDVDPSGNRLLSKDWKNGGVASVSQSFVRLTPDRQSKKGAVWSRKSLGTDTFSTILKFRISGQGKKFFGDGMALWVMQQAYFV--EGDLHGSVERFTGFGVIFDTFKNT--------ESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSVESMSRAKVIVTGKRLVVQIDGKNDGQFKDCAVV-DLPFAMDWAKSAHIGVTASTGQ 259
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A1V9ZF38_9STRA (Lectin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZF38_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.320e-32 Identity = 84/220 (38.18%), Postives = 116/220 (52.73%), Query Frame = 1 Query: 148 PFDKHDHKGARII-PYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFN-VMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798 PFDK D++G R+I + G T +++SFVRLTPD+ G +WSR + FS +FRISG K +GD I L + Y GQ G+D FTG+ IV +T +N E G H+DV+V N+GT+ L D + GC R+ E DDF+ V S+R+RL VE N + +EVD ++ W C L A+W + VGI T Sbjct: 27 PFDKVDYQGVRVINDTWSIGGTTEVLKSFVRLTPDRQNRNGYVWSREVLGRESFSAILQFRISGTGKKWFGDGIGLWLMTSPYVRGQN---HGVDPAFTGVGIVIDT---FVNS-----EHKGGHKDVTVQINDGTKTLETLQDEAKIGCDGAFRYHEDSDDFDAVYSSSRLRLVVERNNLKIEVDPKSKAEWVACYE-GTLPFAANWLESARVGITGST 234
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A067C8K8_SAPPC (L-type lectin-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8K8_SAPPC) HSP 1 Score: 129 bits (325), Expect = 1.900e-31 Identity = 82/247 (33.20%), Postives = 123/247 (49.80%), Query Frame = 1 Query: 67 VVAVVVGLACCAVRVSGELKQQLSVLGPFDKHDHKGARIIPYFEKTGAT-NIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFNVMQS-TRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798 +V ++V LA C G Q S P+ K D++G R+I TG T +M+SFVRLTPD+ G +WS+ + FS +FRISG K +GD I L + Y G GID F G+ IV +T +N E G H+DV++ N+GT+ L D + GC R+ E D+F+ + S +R+R +E N + +E+D ++ W C L A+W + +G+ T Sbjct: 1 MVRLLVLLAACVGLAQGAALQSHSFRPPYTKVDYQGVRVINDTWTTGGTAEVMKSFVRLTPDRQNRNGHVWSQDALGRDSFSAVMQFRISGTGKKWFGDGIGLWLTSSPYVRGSN---HGIDAAFNGVGIVIDT---FVNP-----EHKGGHKDVTIQINDGTKTLSTLQDETKIGCDGAFRYHEDSDEFDAVYSASRLRFTIERNNIKVEIDPKSKAEWTACYE-GQLPFAANWLETARIGLTGST 235
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A1W0A9K6_9STRA (Lectin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9K6_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.890e-30 Identity = 80/240 (33.33%), Postives = 122/240 (50.83%), Query Frame = 1 Query: 88 LACCAVRVSGELKQQLSVLGPFDKHDHKGARII-PYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFN-VMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798 LA A V+ + S PF K D++G RII + + G I+++FVRLTPD+ G +WSR + FS +FRISG + +GD I L + P + G GID + G+ I+ +T +N E G H+DV++ N+GT+N L D + GC R+ E D F+ V ++R+R+ +E N + +E+D ++ W C L PADW + +GI T Sbjct: 7 LAVAAWTVAAAPLESHSFQPPFTKVDYQGQRIINETWAQGGTVEILKNFVRLTPDRQNRNGYVWSREALRRDTFSAVMQFRISGQGQKWFGDGIGLWVTPTPHSKGPN---HGIDPAYYGVGIIIDT---FVNS-----EHKGGHKDVTLQINDGTKNLDTLNDETKIGCDGAFRYHENSDGFDPVYSASRLRVVIERNNIKIEIDPKSQAEWSSCYE-GQLPFPADWLENARIGITGST 234
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A813CUN2_9DINO (LMAN2L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CUN2_9DINO) HSP 1 Score: 126 bits (317), Expect = 4.000e-30 Identity = 86/255 (33.73%), Postives = 135/255 (52.94%), Query Frame = 1 Query: 88 LACCAVRVSGE-LKQQLSVLGPFDKHDHKGARIIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIAL-VIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDS----------LEGCTANVRFDETRDDFNVMQS-TRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPA---DWASKSNVGIIAKTSE 804 LA CAV +G+ + + LS P + D G R++P + K G M++FVRLTPD+ ++ G+LWSR+ + ++ E KFRISGA + +GD +AL +++ G R G +E FTG +V +T +N E RH+DVS+I FG+ +S + GC + R+ E RDDF + VRL E N+V++ +DAR TG ++ C + L +W S +++G+ A T + Sbjct: 8 LALCAVSAAGQDIIEDLSFAAPLSEFDVDGTRLVPGYRKGGHAEAMKTFVRLTPDRADKAGSLWSRAALNKEVWTAELKFRISGAGRTLFGDGLALWYTTDTQFRPG---RLHGHNEFFTGFGVVLDT---FVNT-----ENAARHKDVSLI-------FGDSKNSPLAPPSDAPPVPGCDGDFRYSEARDDFAPAERFAAVRLVKERNSVSVFLDARGTGDFKSCISSLMLPQHLRGNEWWSMAHIGVSASTGQ 244
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: A0A8K1CDM0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDM0_PYTOL) HSP 1 Score: 122 bits (305), Expect = 1.510e-28 Identity = 80/252 (31.75%), Postives = 130/252 (51.59%), Query Frame = 1 Query: 55 MVQAVVAVV-VGLACCAVRVSGELKQQLSVLGPFDKHDHKGARII-PYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFFGIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFNVMQS-TRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798 M++++ A++ V +A CA V +LS PF++ D G RI+ + G+ ++F+RLT D+ + G LW R + F+ FRISG K +GD I L +++ +G G ++FTG+ +V +T E G H+DVS+ N+G+++ + D GC A VR+ E F+ + S +RVR+K++G V +EVD + GRW C+ + + ADW S +GI T Sbjct: 1 MMRSIAALLCVLVALCASAVHAVRLDELSFKPPFNRVDGDGRRIVNDTWTYGGSAETKKNFIRLTTDRQSKRGYLWQRDQLNRDTFTAVMTFRISGVGKRWFGDGIGLWFT--NHRSFVQGPNHGFTDRFTGVGVVIDTFNN--------PEHRGGHKDVSIQVNDGSKDINMINDQTRVGCDAAVRYHEQSAAFDPVHSMSRVRVKIDGRKVVVEVDPSSNGRWESCAEVT-VPFAADWLRSSTIGITGAT 241
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Match: K3WDP7_GLOUD (L-type lectin-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP7_GLOUD) HSP 1 Score: 120 bits (300), Expect = 8.090e-28 Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 1 Query: 61 QAVVAVVVGLACC--AVRVSGELKQQLSVLGPFDKHDHKGAR-IIPYFEKTGATNIMQSFVRLTPDKPEELGTLWSRSTIATSDFSLEWKFRISGAEKVKYGDTIALVIAPMKYKAGQEGRFF-----GIDEKFTGLVIVANTNRQLLNKDKLPGEPMGRHRDVSVIANNGTRNFGNLIDSLE-GCTANVRFDETRDDFN-VMQSTRVRLKVEGNTVAMEVDARNTGRWRRCSTMAHLDMPADWASKSNVGIIAKT 798 + + A+ AC A VS E L+ P+DK G R + FE G+T++ ++FVRLTPD+ + G++WSR + + F FRI G K +GD I + + EGR+ G +++ G+ I+ +T + + E G H+DV+V N+G + L D + GC A R+ F+ V S+R+R+KV+GN + +E+D +N G+W +C L DW ++ +GI A T Sbjct: 4 KTLYALAAAAACALHATGVSAEALNHLTFKEPYDKVGLDGKRQLSDEFEVGGSTDVKKNFVRLTPDRQSKRGSIWSRRVVDSEKFVSVVTFRIHGQGKKWFGDGIGIWLT-------HEGRYVNGDNHGFTDQYYGVGIILDTFKNV--------EHRGGHKDVTVQINDGKKTLDMLNDETKIGCDAAFRYHSNSAAFDPVYSSSRLRIKVDGNKLTLEIDPKNEGKWSQCY-QGTLPFSQDWLRRATLGITAST 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10168.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10168.194.1 >prot_Ecto-sp13_S_contig10168.194.1 ID=prot_Ecto-sp13_S_contig10168.194.1|Name=mRNA_Ecto-sp13_S_contig10168.194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp MAQQRMRRKQPRPGRRVGMVQAVVAVVVGLACCAVRVSGELKQQLSVLGPback to top mRNA from alignment at Ecto-sp13_S_contig10168:1150..5549+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10168.194.1 ID=mRNA_Ecto-sp13_S_contig10168.194.1|Name=mRNA_Ecto-sp13_S_contig10168.194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10168:1150..5549+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10168:1150..5549+ >mRNA_Ecto-sp13_S_contig10168.194.1 ID=mRNA_Ecto-sp13_S_contig10168.194.1|Name=mRNA_Ecto-sp13_S_contig10168.194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10168:1150..5549+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |