Homology
BLAST of mRNA_Ecto-sp13_S_contig10166.193.1 vs. uniprot
Match:
D8LGD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD9_ECTSI)
HSP 1 Score: 121 bits (304), Expect = 1.850e-34
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 1 LNEEGLRRANGVGENDVEELNSPHPPPSPFLCGPLP*PWWKRTWSAIVEKGNEKLPPPVPQAKPSYNRDLKS 216
+NEEGLRRANGVG+ VEE NS HPPPSPFLCGPLP P + WSAI++KG+EKLPPPVPQAKPSYNRDLKS
Sbjct: 1 MNEEGLRRANGVGKKGVEEPNSAHPPPSPFLCGPLPLPVVETVWSAILKKGDEKLPPPVPQAKPSYNRDLKS 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10166.193.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.85e-34 / Id = 79.17 Sequence D8LGD9_ECTSI
Match Name E-value Identity Description
D8LGD9_ECTSI 1.850e-34 79.17 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 250 Hectar predicted targeting category no signal peptide or anchor Exons 2 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-16_003680.1 Cds size 111
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462512.192194-UTR-Ecto-sp13_S_contig10166:665..732 1681462512.192194-UTR-Ecto-sp13_S_contig10166:665..732 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10166 666..732 - 1681462512.2008693-UTR-Ecto-sp13_S_contig10166:965..1037 1681462512.2008693-UTR-Ecto-sp13_S_contig10166:965..1037 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10166 966..1037 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462512.209432-CDS-Ecto-sp13_S_contig10166:1037..1148 1681462512.209432-CDS-Ecto-sp13_S_contig10166:1037..1148 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10166 1038..1148 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10166.193.1
>prot_Ecto-sp13_S_contig10166.193.1 ID=prot_Ecto-sp13_S_contig10166.193.1|Name=mRNA_Ecto-sp13_S_contig10166.193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
LNEEGLRRANGVGENDVEELNSPHPPPSPFLCGPLP* back to top mRNA from alignment at Ecto-sp13_S_contig10166:666..1148-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10166.193.1 ID=mRNA_Ecto-sp13_S_contig10166.193.1|Name=mRNA_Ecto-sp13_S_contig10166.193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10166:666..1148- (Ectocarpus species13 EcNAP12_S_4_19m)TTGAACGAAGAGGGTCTCCGTCGAGCAAATGGGGTTGGCGAGAACGATGT
TGAAGAGCTGAACAGCCCACACCCTCCCCCCTCTCCCTTCTTGTGCGGTC
CTCTGCCCTAG CCGTGGTGGAAAAGGACGTGGTCGGCGATCGTCGAGAAG
GGGAACGAAAAGCTGCCGCCCCCAGTCCCTCAG GTAAAACATTGGTCGGA
GTACACTCACGGCTATGCCTACCTACGAACAAGGAGTTGGTACTAGTATC
ACGGGTTTCGTTGGTGGTGCAAGCAATATGTAAAGAGGCTAGCACGAGAA
ATTCCTATTGCCGACGTGCAATACGTTCGATCCACAAGATGAAACTGACC
GACGCTCAATTGCCTTGCTCTCTCTCTTGGCCCTCCGCTCTGCCGTCCCC
GTCGTTGTCTTTGCAGGCCAAGCCGTCCTACAACCGAGATTTAAAGTCGG
TGGCAAGGAAGGAGGGCAACATCAACACCCCGA back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10166:666..1148-
>mRNA_Ecto-sp13_S_contig10166.193.1 ID=mRNA_Ecto-sp13_S_contig10166.193.1|Name=mRNA_Ecto-sp13_S_contig10166.193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10166:666..1148- (Ectocarpus species13 EcNAP12_S_4_19m) back to top