Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 747 |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Cds size | 519 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681462512.1215975-UTR-Ecto-sp13_S_contig10162:1637..1820 | 1681462512.1215975-UTR-Ecto-sp13_S_contig10162:1637..1820 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10162 1638..1820 + |
1681462512.1616058-UTR-Ecto-sp13_S_contig10162:3759..3804 | 1681462512.1616058-UTR-Ecto-sp13_S_contig10162:3759..3804 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10162 3760..3804 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681462512.1323779-CDS-Ecto-sp13_S_contig10162:1820..2080 | 1681462512.1323779-CDS-Ecto-sp13_S_contig10162:1820..2080 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10162 1821..2080 + |
1681462512.1423788-CDS-Ecto-sp13_S_contig10162:2634..2860 | 1681462512.1423788-CDS-Ecto-sp13_S_contig10162:2634..2860 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10162 2635..2860 + |
1681462512.1519725-CDS-Ecto-sp13_S_contig10162:3726..3759 | 1681462512.1519725-CDS-Ecto-sp13_S_contig10162:3726..3759 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10162 3727..3759 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10162.192.1 >prot_Ecto-sp13_S_contig10162.192.1 ID=prot_Ecto-sp13_S_contig10162.192.1|Name=mRNA_Ecto-sp13_S_contig10162.192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MHPQNTNETYTLLLLLQVRAAAKGTHRTSDREGFLKPAACSSERISGGSK YNMCAHPRSNGSSKRSIDESFLPPRCYNVESWVHIFRTITNMGGGSQIHG PPAQACMLLAVWLLWLCTCLPSSHWRARTTTSLEATCPRFHHARTAGKNL KGQLKKRPIRSQGDLSQTGGRG* back to topmRNA from alignment at Ecto-sp13_S_contig10162:1638..3804+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10162.192.1 ID=mRNA_Ecto-sp13_S_contig10162.192.1|Name=mRNA_Ecto-sp13_S_contig10162.192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10162:1638..3804+ (Ectocarpus species13 EcNAP12_S_4_19m) GCAGCACACGAGACTGCTGTACGCCAAGGACAGCCGAAGGCACACATCAT
AGGAGGCGTAGGGGGCGACTGTCAGAGCCCGTTACCTGCTGTCGGCGGCA
CAAGCGAGGGAGGCGACACAGGTCAATCCACTGCTTGTGTTCATCTGTCT
GCAGGCCGCCGATCTAAAGCCTTTCCCACACAGATGCACCCCCAAAACAC
AAATGAGACGTACACACTGCTGCTGCTGCTGCAGGTCAGGGCGGCGGCCA
AAGGAACACATCGTACGAGCGATCGGGAGGGATTTTTGAAGCCCGCTGCC
TGCTCCTCGGAGCGTATAAGCGGAGGAAGCAAGTACAACATGTGTGCACA
TCCACGTAGCAACGGCAGCTCCAAGCGGTCGATTGATGAGAGCTTCTTAC
CCCCGCGCTGCTACAATGTGGAGTCCTGGGTACACATCTTCAGGTTCTTT
ATATCTTAGCATACGTTGAGTTGGGTAAATTAGCGTGTGACCACGGGAAT
CAGCCGCGTCAAGAGCTAGGTAGCACGGACAGGAACGGCTTCAACAACTT
CAGTACTGCTGTGCAAAAATGCTGGCGCCGACAGGAGCAGTGGCAATCAC
CATGCCTCCCAACGATGTTCCGCGAACGCCTGCTGGCTATCCGCTACGAC
AGCAGTTGTGCAAACGTCTATTATTGAAGCACACAGATAAAACATCGCGG
ATACAGCAAAGAAAACTGCTCAAATCAGCTTGTAAGTGATTGCGCTTGGC
GTGACAAGCAAGGGTCGTCTCGAGGTATGGGTATGACCGAACCATCTCTC
ACATGTACGTCCTAACTCTTTTCGAATACACCACGGACAGATCTTCCTCT
CACCGAGAGTGTCACACACAATGCCGCCGGAAGACTCCGTGCGATCCGCA
GTTCCCAAAACAGCGGGTCTGCGTGTAATGACTTCGGCGGCCGGGCTTAC
GGGCTTGCCGACGTGTTGCTCCGCGTATTGCTCCGAATGTGCGGCAGAAC
CATCACTAACATGGGGGGGGGATCACAGATACACGGACCCCCGGCCCAAG
CTTGCATGCTGCTTGCCGTCTGGTTGCTGTGGCTCTGCACTTGCTTGCCC
AGCAGCCACTGGCGGGCACGCACCACAACCTCCTTGGAGGCAACGTGCCC
TCGGTTCCATCATGCGCGCACGGCGGGAAAGAACTTAAAGGGACAGCTGA
AGAAGCGTCCCATCAGGTCTCAGGTACGCACTCAGCGTGCCACGCAGTAC
GCTAAAATTATGGCTTATGTGTTTCTAAAAGAGAAGGAAATCTCTGAGTA
GTTCCGGCCGTTTAGGCAAGGTATAAAGCGAAACCAGGGCACACAAAATG
TCTTCGCGTGTAGAACTGTAGAACATGACATGCTTGGGGTATCCTGCTGA
TTTCATAGCACGTAGCCATCTGTGCAGGGAACACCGTCGTCACCCTCACA
CCCACCGTCCGTGTTGTATAAACCGGGTAGGCCGAAGCTTGTAGGTTTGT
GTAGAAAGGCAGCTCGGCCGGTGAGGGCCGAGATGGGAAAGTCTTGTAAT
AGAGGGAAGAAAGAAGAGCAGAGACCACTCGAGAGCGAGCAGCCGAAGAA
GAGTGCGTCACCACACCTATCCGTCAAGCAATTCAGATCACTCATCGAAT
CTCCGAAGAAACCAAGCAGAAACTCCCTGTCATCCGCGATCTACCAACTG
CAATCTCCGTAGATCCATGTCCCAGATTCAACCACGTTACTATGCTACGA
GTAAATCTTAAAGCCCCCCTGCTCATATGCATTGTTATGACACGGCAAGT
CAATATAATTCCATAAGACCCAAAACGTGGATCCTACTCCTCCATGACAA
ACAAATAACCAAGAATGAATCCGATTATGCAAGTGTTCCTGACCCCACAA
CGTCTTGTCCCATCGTCTTCATTTCTTCTCTGCAAAACGCTCTTTTTCTG
GTCCACCCTTTCTCAGCACTTCGCCGCAACGACACCCGCAAAGTCCTTAT
GTCCCTCGCACACCTCAAAGCCTGAAACAATCCATTGACCCAAACCTATC
TGTGGAACTCCTTTTCGTTTACTTTCCAAAACACGTAAGGGTGACCTATC
TCAGACCGGCGGAAGGGGTTGAACCTTCTCTCGACTGTATGACCAGAGGA
GACTTCCGGAGCGACGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10162:1638..3804+ >mRNA_Ecto-sp13_S_contig10162.192.1 ID=mRNA_Ecto-sp13_S_contig10162.192.1|Name=mRNA_Ecto-sp13_S_contig10162.192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10162:1638..3804+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCACCCCCAAAACACAAATGAGACGTACACACTGCTGCTGCTGCTGCA GGTCAGGGCGGCGGCCAAAGGAACACATCGTACGAGCGATCGGGAGGGAT TTTTGAAGCCCGCTGCCTGCTCCTCGGAGCGTATAAGCGGAGGAAGCAAG TACAACATGTGTGCACATCCACGTAGCAACGGCAGCTCCAAGCGGTCGAT TGATGAGAGCTTCTTACCCCCGCGCTGCTACAATGTGGAGTCCTGGGTAC ACATCTTCAGAACCATCACTAACATGGGGGGGGGATCACAGATACACGGA CCCCCGGCCCAAGCTTGCATGCTGCTTGCCGTCTGGTTGCTGTGGCTCTG CACTTGCTTGCCCAGCAGCCACTGGCGGGCACGCACCACAACCTCCTTGG AGGCAACGTGCCCTCGGTTCCATCATGCGCGCACGGCGGGAAAGAACTTA AAGGGACAGCTGAAGAAGCGTCCCATCAGGTCTCAGGGTGACCTATCTCA GACCGGCGGAAGGGGTTGA back to top
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