mRNA_Ecto-sp13_S_contig10158.187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Match: D7G3C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C1_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.000e-35 Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 Query: 28 MSEKGSRWLQGCYINIDDATSRLCSLHVSRPSSS-SSSSPESGTDDGSAAPDYLTRVGNGSLPVSW 222
MSEKGSRWLQGCY+NIDDATSRLCSLHVSR SSS SSSSPESGTDDGSAAP+YLTRVGNGSLPVSW
Sbjct: 1 MSEKGSRWLQGCYVNIDDATSRLCSLHVSRRSSSPSSSSPESGTDDGSAAPNYLTRVGNGSLPVSW 66
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.640e-34 Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 1 Query: 1 MLHGREAFTMSEKGSRWLQGCYINIDDATSRLCSLHVSRPSSSSS----SSPESGTDDGSAAPDYLTRVGNGSLPVSW 222
MLHGREAFT SEKGSRWLQGCY+NIDDATSRLC LHVSR SSSSS S+PESGTD GS AP+YLTRVGNGSLPVSW
Sbjct: 431 MLHGREAFTTSEKGSRWLQGCYVNIDDATSRLCGLHVSRRSSSSSPSSSSAPESGTDYGSVAPNYLTRVGNGSLPVSW 508
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Match: A0A2D8P1E3_9GAMM (Taurine catabolism dioxygenase TauD n=5 Tax=Salinicola TaxID=404432 RepID=A0A2D8P1E3_9GAMM) HSP 1 Score: 52.4 bits (124), Expect = 4.330e-6 Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 Query: 1 MLHGREAFTMSEKGSRWLQGCYINIDDATSRLCSLHVSR 117
+LH R+AF +S+ G RWLQGCY+ D+A SRL LH +R
Sbjct: 368 LLHARDAFDISQGGRRWLQGCYLERDEARSRLRMLHRAR 406
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Match: A0A1Q8T0J6_9GAMM (Taurine catabolism dioxygenase TauD n=4 Tax=Salinicola TaxID=404432 RepID=A0A1Q8T0J6_9GAMM) HSP 1 Score: 50.1 bits (118), Expect = 2.830e-5 Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 1 MLHGREAFTMSEKGSRWLQGCYINIDDATSRL 96
+LH R+AF +S+ GSRWLQGCY+ D+A SRL
Sbjct: 357 LLHARDAFDVSQGGSRWLQGCYLERDEARSRL 388
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Match: UPI000B402552 (TauD/TfdA family dioxygenase n=1 Tax=Salinicola salarius TaxID=430457 RepID=UPI000B402552) HSP 1 Score: 50.1 bits (118), Expect = 2.830e-5 Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 1 MLHGREAFTMSEKGSRWLQGCYINIDDATSRL 96
+LH R+AF +S+ GSRWLQGCY+ D+A SRL
Sbjct: 370 LLHARDAFDVSQGGSRWLQGCYLERDEARSRL 401
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Match: UPI00167948AD (TauD/TfdA family dioxygenase n=1 Tax=Salinicola rhizosphaerae TaxID=1443141 RepID=UPI00167948AD) HSP 1 Score: 50.1 bits (118), Expect = 2.840e-5 Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 1 MLHGREAFTMSEKGSRWLQGCYINIDDATSRL 96
+LH R+AF +S+ GSRWLQGCY+ D+A SRL
Sbjct: 377 LLHARDAFDVSQGGSRWLQGCYLERDEARSRL 408 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10158.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10158.187.1 >prot_Ecto-sp13_S_contig10158.187.1 ID=prot_Ecto-sp13_S_contig10158.187.1|Name=mRNA_Ecto-sp13_S_contig10158.187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp MLHGREAFTMSEKGSRWLQGCYINIDDATSRLCSLHVSRPSSSSSSSPESback to top mRNA from alignment at Ecto-sp13_S_contig10158:1095..2035+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10158.187.1 ID=mRNA_Ecto-sp13_S_contig10158.187.1|Name=mRNA_Ecto-sp13_S_contig10158.187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10158:1095..2035+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10158:1095..2035+ >mRNA_Ecto-sp13_S_contig10158.187.1 ID=mRNA_Ecto-sp13_S_contig10158.187.1|Name=mRNA_Ecto-sp13_S_contig10158.187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10158:1095..2035+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |