Homology
BLAST of mRNA_Ecto-sp13_S_contig10154.183.1 vs. uniprot
Match: A0A6H5JY91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY91_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 6.670e-18 Identity = 56/108 (51.85%), Postives = 59/108 (54.63%), Query Frame = 2 Query: 2 AEGAGIVPGAAEGEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXSFCPGRRPLRPVPRRSISLPDRLIPTPSAVTRISGDFASLARANTI--------ADIFDGGNGRG 301
A+GAG +PGA GEAK CP RRP P PRRSISLPDRLIPTP+AVT GDFASLARANTI A I DGGNGRG
Sbjct: 103 AQGAGNIPGAVAGEAKVGAEVEPSSISGSSATAASTPAAIPP--LCPRRRPXXPGPRRSISLPDRLIPTPAAVT---GDFASLARANTIGHHLPFVTAGIIDGGNGRG 205
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 312 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 309 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462511.3993666-CDS-Ecto-sp13_S_contig10154:518..827 | 1681462511.3993666-CDS-Ecto-sp13_S_contig10154:518..827 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10154 519..827 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10154.183.1 >prot_Ecto-sp13_S_contig10154.183.1 ID=prot_Ecto-sp13_S_contig10154.183.1|Name=mRNA_Ecto-sp13_S_contig10154.183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
GGGCRDRSRRRRGGSKDSRRGGILVHLRFLLLRRPRLYPGGPPFFLPRAS
SSSSGAAQEHQPSRPAYPHALCCDQDLRRFRVVGEGQHNRRHFRRRQRQG
TVD back to topmRNA from alignment at Ecto-sp13_S_contig10154:519..829+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10154.183.1 ID=mRNA_Ecto-sp13_S_contig10154.183.1|Name=mRNA_Ecto-sp13_S_contig10154.183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10154:519..829+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGGGTGCAGGGATCGTTCCAGGCGCCGCCGAGGGGGAAGCAAAGA
TTCGCGCAGAGGTGGAATCCTCGTCCATCTCCGGTTCCTCCTCCTCCGCC
GCCCCCGCCTCTACCCCGGTGGCCCTCCCTTCTTTCTGCCCCGGGCGTCG
TCCTCTTCGTCCGGTGCCGCGCAGGAGCATCAGCCTTCCCGACCGGCTTA
TCCCCACGCCCTCTGCTGTGACCAGGATCTCCGGAGATTTCGCGTCGTTG
GCGAGGGCCAACACAATCGCAGACATTTTCGACGGCGGCAACGGCAGGGG
ACAGTAGATGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10154:519..829+ >mRNA_Ecto-sp13_S_contig10154.183.1 ID=mRNA_Ecto-sp13_S_contig10154.183.1|Name=mRNA_Ecto-sp13_S_contig10154.183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10154:519..829+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGGGTGCAGGGATCGTTCCAGGCGCCGCCGAGGGGGAAGCAAAGA
TTCGCGCAGAGGTGGAATCCTCGTCCATCTCCGGTTCCTCCTCCTCCGCC
GCCCCCGCCTCTACCCCGGTGGCCCTCCCTTCTTTCTGCCCCGGGCGTCG
TCCTCTTCGTCCGGTGCCGCGCAGGAGCATCAGCCTTCCCGACCGGCTTA
TCCCCACGCCCTCTGCTGTGACCAGGATCTCCGGAGATTTCGCGTCGTTG
GCGAGGGCCAACACAATCGCAGACATTTTCGACGGCGGCAACGGCAGGGG
ACAGTAGAT back to top
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