mRNA_Ecto-sp13_S_contig101504.179.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A6H5J9J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J1_9PHAE) HSP 1 Score: 151 bits (381), Expect = 7.890e-41 Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 Query: 1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 +ANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVA+DGCKEKV Sbjct: 560 RANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVAQDGCKEKV 633
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: W7TJD8_9STRA (Atp-dependent rna helicase ddx1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJD8_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.210e-29 Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1 Query: 7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 NL AFK+GDVRFLICTDVAARG+DI+ LP+VIN TLPD ENYIHR+GRVGR DCLGLA+S+VA G +EKV Sbjct: 580 NLQAFKEGDVRFLICTDVAARGIDIQNLPFVINYTLPDAVENYIHRVGRVGRADCLGLAISLVAASGYQEKV 651
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A7S2WVU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU8_9STRA) HSP 1 Score: 116 bits (291), Expect = 9.830e-29 Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 Query: 7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVA 198 NL AFK+GDVRFLICTDVAARG+DI+GLPYV+N+TLPDVPENYIHRIGRVGR D +GLAVS+VA Sbjct: 303 NLAAFKEGDVRFLICTDVAARGIDIQGLPYVVNVTLPDVPENYIHRIGRVGRADRMGLAVSLVA 366
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A183T7I9_SCHSO (Helicase C-terminal domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183T7I9_SCHSO) HSP 1 Score: 112 bits (279), Expect = 1.010e-28 Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1 Query: 1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 +ANL FK+GDV FLICTDVAARG+DI GLPYVIN+TLPD ENY+HRIGRVGR + +GLA+S+VA CKEKV Sbjct: 107 KANLQKFKNGDVNFLICTDVAARGLDITGLPYVINVTLPDEKENYVHRIGRVGRAERMGLAISLVA--ACKEKV 178
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A7S0HCK1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HCK1_9CRYP) HSP 1 Score: 108 bits (270), Expect = 5.240e-28 Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1 Query: 10 LDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDG-----CKEKVQG 228 + AFKDGDVRFLI TDVAARG+DI GLPYV+NMTLPDV NY+HRIGRVGR D +GLA+S VA + C++ V+G Sbjct: 1 MQAFKDGDVRFLIATDVAARGIDISGLPYVVNMTLPDVAANYVHRIGRVGRADKMGLAISFVATEKERVWFCQKNVKG 78
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A0R3SKL4_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SKL4_HYMDI) HSP 1 Score: 111 bits (278), Expect = 1.230e-27 Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 Query: 1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 +ANL FKDG+V FLICTDVAARG+DI GLPYVIN+TLPD +NY+HRIGRVGR + +GLA+S+VA CKEKV Sbjct: 292 KANLQRFKDGEVNFLICTDVAARGIDITGLPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT--CKEKV 363
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A482T3W9_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3W9_9ARCH) HSP 1 Score: 108 bits (269), Expect = 2.320e-27 Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 1 Query: 7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 NL FKDG+++FLICTDVAARG+D+ LPYVIN+TLPD P++Y+HR+GR GR D +GLA+SIVA D KEKV Sbjct: 51 NLQRFKDGEIKFLICTDVAARGIDVDSLPYVINVTLPDQPDDYVHRVGRAGRADRMGLAISIVAMDN-KEKV 121
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A7S0T1I6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T1I6_9CHLO) HSP 1 Score: 112 bits (280), Expect = 2.940e-27 Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 1 Query: 7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVA 198 NL AFK+GDVRF+ICTDVAARG+DIKGLP+VINMTLPD PE+YIHRIGRVGR D +GLA+S+V+ Sbjct: 338 NLQAFKEGDVRFMICTDVAARGLDIKGLPFVINMTLPDRPEDYIHRIGRVGRADTMGLAISLVS 401
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A8J4TNC2_9TREM (ATP-dependent RNA helicase DDX1 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4TNC2_9TREM) HSP 1 Score: 109 bits (272), Expect = 4.360e-27 Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 Query: 1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 +ANL FK+GDVRFLICTDVAARG+DI GLPYVIN+TLPD +NY+HRIGRVGR + +GLA+S+VA KEKV Sbjct: 136 KANLQKFKNGDVRFLICTDVAARGIDIAGLPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT--VKEKV 207
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A8J1XQR3_OWEFU (Ofus.G062670 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XQR3_OWEFU) HSP 1 Score: 107 bits (268), Expect = 5.880e-27 Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 1 Query: 1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222 + NL+ FK G+V+FLICTDVAARG+DI GLP+VIN+TLPD +NY+HRIGRVGR + +GLA+S+VA+ CKEKV Sbjct: 79 KGNLERFKRGEVKFLICTDVAARGIDITGLPFVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAQ--CKEKV 150 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101504.179.1 >prot_Ecto-sp13_S_contig101504.179.1 ID=prot_Ecto-sp13_S_contig101504.179.1|Name=mRNA_Ecto-sp13_S_contig101504.179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGback to top mRNA from alignment at Ecto-sp13_S_contig101504:154..399+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig101504.179.1 ID=mRNA_Ecto-sp13_S_contig101504.179.1|Name=mRNA_Ecto-sp13_S_contig101504.179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101504:154..399+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101504:154..399+ >mRNA_Ecto-sp13_S_contig101504.179.1 ID=mRNA_Ecto-sp13_S_contig101504.179.1|Name=mRNA_Ecto-sp13_S_contig101504.179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101504:154..399+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |