mRNA_Ecto-sp13_S_contig10150.178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI) HSP 1 Score: 504 bits (1298), Expect = 4.100e-177 Identity = 244/254 (96.06%), Postives = 250/254 (98.43%), Query Frame = 1 Query: 1 QVFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGAK 762 +VFSLAPMMEYTDRHMRYL+RLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLA FVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDF+YRLVKDFP+VDFTLNGGVNTYEE A+SCLEQGAHGVMVGRSWSSNPWYWS+ADS LFGAK Sbjct: 80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEE--AVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFGAK 331
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A836CCW1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW1_9STRA) HSP 1 Score: 349 bits (895), Expect = 2.210e-117 Identity = 168/253 (66.40%), Postives = 200/253 (79.05%), Query Frame = 1 Query: 1 QVFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGA 759 Q SLAPMMEYTDRHMRY++RL T + V+WTEM+P +I+HN DDL R L Y++ EHPVVLQ+GGSD VR AC LARPY+YD INLN GCPSE+VAGKGAFGAALMR P LV D+C AM++G+G +VKCRIGVD++DSY LA FV+ V+RG GV FIVHARKAIL GLSP QNR +PPLKYD++YRLV+DFPE+ FTLNGGV TY V L+ GAHGVMVGR+ PWYWS++DS++FGA Sbjct: 8 QRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGG-AQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQ--EALDGGAHGVMVGRAVLERPWYWSQSDSRVFGA 257
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A4D9D156_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D156_9STRA) HSP 1 Score: 327 bits (838), Expect = 1.150e-108 Identity = 156/250 (62.40%), Postives = 196/250 (78.40%), Query Frame = 1 Query: 10 SLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGA 759 SLAPMMEYTDRH+R+L+RLL+ R VL+TEM+ + T+ HN + RFL +N EHPVVLQ+GGSD + EA RLA PYKY+A+NLNCGCPSE+V+GKG FGAALMR P V +LC AM +G+ P+TVKCRIGVD+DDSYEQLA FVE VS + V HF+VHARKAILGGLSP QNR +PPLKY F+YRL ++FP + FTLNGGV +YE+V+ L +G HGVM+GR+ + P+YWS D+++FG+ Sbjct: 26 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPGQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSRGKIPVTVKCRIGVDDDDSYEQLAHFVETVSGASPVRHFLVHARKAILGGLSPDQNRRVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEH--LREGVHGVMIGRAVVARPFYWSDVDARVFGS 273
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A7S3USD9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USD9_HETAK) HSP 1 Score: 322 bits (825), Expect = 5.750e-106 Identity = 158/254 (62.20%), Postives = 198/254 (77.95%), Query Frame = 1 Query: 1 QVFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPD-DLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGA 759 ++FSLAPMM+YTDRHMR+L+RLL+ VL+TEM+ S TI++NP+ +LGR+LDY+E EHPVVLQ+GGSD ++R A A PY+YDA+NLNCGCPSEKVAGKG FGAALMR LV DLC M A D P+TVK RIGVD++DSYE L F+E V+ + V HFIVHAR AILGGLSPAQNR IPPLKYD++Y LVKD+PE FT+NGG+ YEE+ L +G HGVMVGR+ +++P+ WS+ D ++GA Sbjct: 50 ELFSLAPMMDYTDRHMRFLMRLLSKDMVLYTEMIASGTIVNNPENELGRWLDYSESCEHPVVLQLGGSDPGELRRAAARAAPYRYDAVNLNCGCPSEKVAGKGCFGAALMREAELVGDLCRGM--AAELDCPVTVKSRIGVDDEDSYEGLCNFIETVADRSPVRHFIVHARTAILGGLSPAQNRQIPPLKYDYVYNLVKDYPEFQFTINGGITEYEEIREH--LGRGVHGVMVGRAINADPYKWSQVDELVYGA 299
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A7S2C7I3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I3_9STRA) HSP 1 Score: 310 bits (795), Expect = 2.230e-101 Identity = 154/250 (61.60%), Postives = 191/250 (76.40%), Query Frame = 1 Query: 7 FSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFG 756 FS+APMM+YTDRH RYL+RLL+++ VL+TEMV +ST++HNPD + R+L +++VE+PVVLQ+GGSD D+R + + A Y YD INLNCGCPS+KVAGKG+FGA LM V LC AM G+ PITVKCRIGVD+ DSYEQLA FV VS+ GV HFIVHARKAILGGLSP +NR IPP+KYD +Y+LV DFP + F++NG V TYE+VS L +G HGVMVGRS PW WS DS+++G Sbjct: 76 FSVAPMMDYTDRHFRYLLRLLSSKAVLYTEMVGASTLVHNPD-IDRWLRLSDDVENPVVLQLGGSDCEDLRTSVKRASAYNYDEINLNCGCPSDKVAGKGSFGATLMLDAKRVGQLCDAMAQECGK--PITVKCRIGVDDQDSYEQLAEFVGTVSQTGGVEHFIVHARKAILGGLSPEENRRIPPIKYDHVYQLVADFPSLRFSMNGEVKTYEDVSEH--LSRGLHGVMVGRSVIEQPWLWSEVDSRIYG 320
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A453BR81_AEGTS (tRNA-dihydrouridine synthase n=13 Tax=Triticinae TaxID=1648030 RepID=A0A453BR81_AEGTS) HSP 1 Score: 271 bits (693), Expect = 1.700e-87 Identity = 139/252 (55.16%), Postives = 179/252 (71.03%), Query Frame = 1 Query: 4 VFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFG 756 +FS+APMM++TD H R L RL++ L+TEMV + TI+H D L RFL + E +HP+VLQIGGS+ ++ +A LA Y YD INLNCGCPS KVAG G FGA LM P V D A+ A D P++VKCRIGVD+ DSYE+L TFV++V + HFI+HARKA+L GLSPA+NR +PPLKY++ Y L++DFPEV FTLNGG+ T E+VSA + QGAH VMVGR+ +NPW DS+++G Sbjct: 59 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDKLDRFLAFPAE-QHPIVLQIGGSNLDNLAKATELASGYAYDEINLNCGCPSGKVAGHGCFGARLMYDPEFVGDAMSAI--AANCDVPVSVKCRIGVDDRDSYEELCTFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYYALLRDFPEVHFTLNGGLTTIEQVSAS--IRQGAHQVMVGRAAYNNPWNMLGHVDSEIYG 305
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A7S0D9F4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D9F4_9EUKA) HSP 1 Score: 273 bits (697), Expect = 1.710e-86 Identity = 136/254 (53.54%), Postives = 173/254 (68.11%), Query Frame = 1 Query: 7 FSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAM-KDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILG-GLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYWSRADSKLFGAK 762 FS+APMM+YTDRH R+L+R++T + L+TEM+ S +IH D R L Y++ +EHPV LQ+GGSD + + + A PY YDAINLNCGCPS+KV+G+G+FGAALM+ P LC +M + A DTP++VKCRIGVD +D Y L FV + GV HFI+HARKAIL LSP QNR IPPLKY +++RLV DFP F LNGGV + EE L+ G GVMVGR + PWYW D +LFG + Sbjct: 106 FSVAPMMDYTDRHFRFLLRMITKKAWLYTEMITSEALIHG--DADRLLRYHDPIEHPVALQLGGSDPDSLAKGVKKALPYAYDAINLNCGCPSDKVSGRGSFGAALMKEPDYTAVLCESMIQQAAATDTPVSVKCRIGVDENDDYHYLKQFVTALG-DVGVRHFIIHARKAILNMNLSPKQNREIPPLKYQYVHRLVVDFPSYSFVLNGGVKSLEEADEF--LKAGVAGVMVGREIINRPWYWGDVDRRLFGVE 354
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: K3Y7H3_SETIT (Dus domain-containing protein n=6 Tax=Paniceae TaxID=147428 RepID=K3Y7H3_SETIT) HSP 1 Score: 271 bits (694), Expect = 3.840e-86 Identity = 137/252 (54.37%), Postives = 180/252 (71.43%), Query Frame = 1 Query: 4 VFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFG 756 +FS+APMM++TD H R L RL++ L+TEMV + TI+H D+L RFL + EE +HP+VLQIGGS+ ++ +A LA Y YD INLNCGCPS KVAG G FGA LM P V D A+ A D P++VKCRIGVD+ DSYE+L FV++V + HFI+HARKA+L G+SPA+NR +PPLKY++ + L++DFPEV FTLNGG+ T ++VSA + QGA GVMVGRS +NPW DS+++G Sbjct: 57 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDNLDRFLAFPEE-QHPIVLQIGGSNLKNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAI--AANCDVPVSVKCRIGVDDCDSYEELCDFVDKVVSNSPTRHFIIHARKALLSGISPAENRKVPPLKYEYYFALLRDFPEVKFTLNGGITTIDQVSAS--IRQGAQGVMVGRSAYNNPWNMLGHVDSEIYG 303
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A5N5EV39_9ROSA (tRNA-dihydrouridine synthase n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5EV39_9ROSA) HSP 1 Score: 270 bits (689), Expect = 4.160e-86 Identity = 131/252 (51.98%), Postives = 181/252 (71.83%), Query Frame = 1 Query: 7 FSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFGA 759 FS+APMME+TD H R L RL++ L+TEM+ + TI++ D+L RFL+Y+ E +HP+VLQIGG++ ++ +A LA PYKYD IN NCGCPS +VAG G FGA+LM P V + + A D P++VKCRIGVDN DSY +L F+ +VS + HFI+H+RKA+L G+SPA+NR+IPPLKY++ Y L++DFP++ FT+NGG+NT EEV+A GAHGVMVGR+ + PW+ D+ ++GA Sbjct: 19 FSIAPMMEWTDNHYRTLARLISKNAWLYTEMLAAETIVYQKDNLDRFLEYSPE-QHPIVLQIGGNNLENLAKATELANPYKYDEINFNCGCPSPRVAGHGCFGASLMLDPKFVAEAMSVI--AAHTDAPVSVKCRIGVDNHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGINTVEEVNAAR--RAGAHGVMVGRAAFNKPWHTLGHVDTVVYGA 265
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Match: A0A446L0T7_TRITD (tRNA-dihydrouridine synthase n=13 Tax=Triticeae TaxID=147389 RepID=A0A446L0T7_TRITD) HSP 1 Score: 269 bits (688), Expect = 4.210e-86 Identity = 138/252 (54.76%), Postives = 179/252 (71.03%), Query Frame = 1 Query: 4 VFSLAPMMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLATFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFIYRLVKDFPEVDFTLNGGVNTYEEVSALSCLEQGAHGVMVGRSWSSNPWYW-SRADSKLFG 756 +FS+APMM++TD H R L RL++ L+TEM+ + TI+H D L RFL + E +HP+VLQIGGS+ ++ +A LA Y YD INLNCGCPS KVAG G FGA LM P V D A+ A D P++VKCRIGVD+ DSYE+L TFV++V + HFI+HARKA+L GLSPA+NR +PPLKY++ Y L++DFPEV FTLNGG+ T E+VSA + QGAH VMVGR+ +NPW DS+++G Sbjct: 55 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMLVAETIVHQKDKLDRFLAFPAE-QHPIVLQIGGSNLDNLAKATELASGYAYDEINLNCGCPSGKVAGHGCFGARLMYDPEFVGDAMSAI--AANCDVPVSVKCRIGVDDRDSYEELCTFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYYALLRDFPEVHFTLNGGLMTIEQVSAS--IRQGAHQVMVGRAAYNNPWNMLGHVDSEIYG 301 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10150.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10150.178.1 >prot_Ecto-sp13_S_contig10150.178.1 ID=prot_Ecto-sp13_S_contig10150.178.1|Name=mRNA_Ecto-sp13_S_contig10150.178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp MMEYTDRHMRYLVRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEback to top mRNA from alignment at Ecto-sp13_S_contig10150:3220..5420+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10150.178.1 ID=mRNA_Ecto-sp13_S_contig10150.178.1|Name=mRNA_Ecto-sp13_S_contig10150.178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10150:3220..5420+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10150:3220..5420+ >mRNA_Ecto-sp13_S_contig10150.178.1 ID=mRNA_Ecto-sp13_S_contig10150.178.1|Name=mRNA_Ecto-sp13_S_contig10150.178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10150:3220..5420+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |