mRNA_Ecto-sp13_S_contig1015.176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI) HSP 1 Score: 279 bits (713), Expect = 1.970e-89 Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1 Query: 310 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKA 747 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRR VITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKA Sbjct: 1 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRR-VITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKA 145
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A1Z5KFL0_FISSO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFL0_FISSO) HSP 1 Score: 191 bits (486), Expect = 1.840e-56 Identity = 95/171 (55.56%), Postives = 130/171 (76.02%), Query Frame = 1 Query: 238 TGVSNAPAATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKA 747 T S P T D + + +P+DFD+A+K+EG ESQ+VT EL P QV+RAE+G ++++ +G+EM+T TGGG S+ FRR ++TGQN F++DY G+ G+V LGTD PSKI+RL + YGG+++CQ+GA L SHTID+Q EFTK +GFFGGEGF+LQ LTG+GD F+KA Sbjct: 29 TFASQTPTLTSVDGV-VGEPIDFDLAAKIEGNESQIVTIELRPNQVLRAESGAMMYLTEGVEMNTTTGGGLSAGFRR-MMTGQNFFISDYTYTGNTVGRVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDVQMEFTKSFTSGFFGGEGFILQALTGEGDVFLKA 197
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A7S4QQK5_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQK5_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.350e-54 Identity = 96/164 (58.54%), Postives = 125/164 (76.22%), Query Frame = 1 Query: 265 TEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGDAS--GKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKA 747 T D + P++FD+ASK+EG+ESQ+VT +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R ++TGQN+F++DY G++ G V LGTD PSKI+RL YGG+++CQ+GA L SHTIDI+ EF K AGFFGGEGFVLQ LTG GD FVKA Sbjct: 95 TSSDGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKR-LLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKA 257
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.780e-54 Identity = 96/164 (58.54%), Postives = 125/164 (76.22%), Query Frame = 1 Query: 265 TEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGDAS--GKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKA 747 T D + P++FD+ASK+EG+ESQ+VT +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R ++TGQN+F++DY G++ G V LGTD PSKI+RL YGG+++CQ+GA L SHTIDI+ EF K AGFFGGEGFVLQ LTG GD FVKA Sbjct: 95 TSSDGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKR-LLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKA 257
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA) HSP 1 Score: 187 bits (475), Expect = 4.990e-54 Identity = 94/162 (58.02%), Postives = 128/162 (79.01%), Query Frame = 1 Query: 271 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKA 747 +D ALAKP+DFD+AS+VEG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G +SG V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H ++ EFT+ +GFFGGEGFVLQRLTG GDAF+KA Sbjct: 17 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKR-YMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKA 177
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A7S1VUA2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUA2_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.040e-53 Identity = 95/154 (61.69%), Postives = 122/154 (79.22%), Query Frame = 1 Query: 292 KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYV-NRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTK-MMAGFFGGEGFVLQRLTGKGDAFVKA 747 +P++FD+A+K+EG ESQ+VT LEP QV+RAE+G ++FM DG+EM+T TGGG S+ F+R ++TGQN F++DYV NR G+V LGTD PSKIVRL +A YGG++ CQ+GA L SHTIDI+ FTK AGFFG EGFVLQ L+G+GD FVKA Sbjct: 118 RPINFDVAAKIEGNESQIVTVTLEPNQVLRAESGAMMFMTDGVEMNTTTGGGLSTGFQR-MLTGQNFFISDYVYNRPTGKGQVALGTDFPSKIVRLNVAEYGGKITCQKGALLCASHTIDIEMAFTKNFSAGFFGSEGFVLQALSGQGDVFVKA 270
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.090e-53 Identity = 89/151 (58.94%), Postives = 120/151 (79.47%), Query Frame = 1 Query: 298 LDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGKGDAFVKA 747 +DF+ AS++EG +SQ+VT LEPGQV+RAE+G +++M DG+EM+T+TGGG + F+R +TGQN+F++DY +GD G V LGTD PSKI+RL L + G+++CQ+GA L SHT+DI+TEFTK + GFFGGEGFVLQ L G+GD FVKA Sbjct: 49 IDFNTASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKR-FLTGQNVFISDYTYKGDRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKA 198
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: W7T4F9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4F9_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.180e-53 Identity = 94/162 (58.02%), Postives = 127/162 (78.40%), Query Frame = 1 Query: 271 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKA 747 +D ALAKP+DFD+AS+VEG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G +SG V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H ++ EFT+ GFFGGEGFVLQRLTG GDAF+KA Sbjct: 74 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKR-YMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKA 234
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A7S0C9P2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=6 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9P2_9STRA) HSP 1 Score: 182 bits (463), Expect = 4.780e-53 Identity = 96/166 (57.83%), Postives = 126/166 (75.90%), Query Frame = 1 Query: 259 AATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKA 747 AAT D + + P+DFD++SK+EG ESQ+VT ELEP QV+RAE+G +++M +G+ M+T TGGG S+ F+R ++TGQN F++DY G+ G V LGTD PSKI+RL + YGG+++CQ+GA L SHTI+I+ EF K M AGFFGGEGFVLQ LTG GD FVKA Sbjct: 25 AATSADGV-VGLPIDFDVSSKIEGNESQIVTIELEPNQVLRAESGAMMYMTEGVTMETTTGGGMSAGFKR-MMTGQNAFISDYRYDGEPGTKGLVALGTDFPSKIIRLDVKDYGGKIVCQKGALLCASHTINIEMEFAKKMTAGFFGGEGFVLQSLTGDGDVFVKA 188
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Match: A0A7S3L252_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L252_9STRA) HSP 1 Score: 183 bits (464), Expect = 7.230e-53 Identity = 93/154 (60.39%), Postives = 121/154 (78.57%), Query Frame = 1 Query: 292 KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRRVITGQNMFVTDYVNRGDA-SGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGKGDAFVKA 747 +P+DFD+ SK+EG ESQ+VT LEPGQV+RAE+G +++M G+EM+T TGGG SS F R ++TGQN F++DY +G+ +G+V LGTD PSKI+RL + YGG+++CQ+GA L SHTIDI EF+K + GFFGGEGFVLQ LTG GD FVKA Sbjct: 70 RPIDFDIQSKIEGNESQIVTITLEPGQVLRAESGAMMYMTAGVEMNTTTGGGLSSGFSR-MLTGQNFFISDYSYQGETGTGQVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDIAMEFSKNFSTGFFGGEGFVLQALTGDGDVFVKA 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1015.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1015.176.1 >prot_Ecto-sp13_S_contig1015.176.1 ID=prot_Ecto-sp13_S_contig1015.176.1|Name=mRNA_Ecto-sp13_S_contig1015.176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp MTCRGLAASARRLAVLRRGNGFTSVLAVGGSVAPPAANPPAFSAIASGERback to top mRNA from alignment at Ecto-sp13_S_contig1015:22..2901- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1015.176.1 ID=mRNA_Ecto-sp13_S_contig1015.176.1|Name=mRNA_Ecto-sp13_S_contig1015.176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2880bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1015:22..2901- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1015:22..2901- >mRNA_Ecto-sp13_S_contig1015.176.1 ID=mRNA_Ecto-sp13_S_contig1015.176.1|Name=mRNA_Ecto-sp13_S_contig1015.176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1015:22..2901- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |