mRNA_Ecto-sp13_S_contig10146.173.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 226 bits (575), Expect = 2.340e-66 Identity = 113/167 (67.66%), Postives = 131/167 (78.44%), Query Frame = 1 Query: 1 GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKK-LNWLALELDTPVNNTSWPSSLQQLSFGDRFNQ 498 GR ECL AFIVALNQTC+G ++RWYASTLELQLVSL FCGACR VPTLHVRVD+QTPRSLWSP +SH T KR RE + +RVPAVQA GLTW L EVLLQ+SA+E S S Y+R++G SS A+LGSMFWL+ L L + D P + SWP+SL QL FGDRF+Q Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 203 bits (516), Expect = 7.200e-55 Identity = 104/166 (62.65%), Postives = 117/166 (70.48%), Query Frame = 1 Query: 1 GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELDTPVNNTSWPSSLQQLSFGDRFNQ 498 G +CLDAF+VALNQ CDG ++RWY STLELQLVSL CGACR V TLHVRV QTP SLW P Q+HTT + R +V I SRVP VQAFGLTW LP VL Q SA E SGS +R N SSAA+L S W ++L + E D VN SWP+SLQQLSFG FNQ Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQ 170
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.140e-49 Identity = 98/166 (59.04%), Postives = 115/166 (69.28%), Query Frame = 1 Query: 1 GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELDTPVNNTSWPSSLQQLSFGDRFNQ 498 GR EC+DAFIVALN+TCDGG++RWYASTLELQ VSL FC ACR VPT SH+T++ GR V VSR P V+A+ LTW L +VLLQS A+E GS Y+R G SSAANL SM WL++L L LELDTPV SWP+SLQQLSFG +FN+ Sbjct: 15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPT------------------SHSTSTV-GRLVSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 184 bits (467), Expect = 6.880e-49 Identity = 96/166 (57.83%), Postives = 111/166 (66.87%), Query Frame = 1 Query: 1 GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELDTPVNNTSWPSSLQQLSFGDRFNQ 498 GR ECLDAFIVAL Q DG +RWY STLELQLVSL FCGACR + V++ +QTP SLWSPR+SH T KR RE I SRVPAVQA G W LP E+LL SA E S ++ G SSA + G M W +KL L + VN+ SWP+ LQ+LSFGD FNQ Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQ 190
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.590e-34 Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 4 RRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELDT---PVNNTSWPSSLQQLSFGDRFNQ 498 +R CLDAF+VAL+Q +GG++RWY STL+LQL SL FCGACR P LHV VD +TP +LWS Q++ TA +RVPAVQA GLTW PTE L S++ E + ++ ANL S+ W + L L ++ P+ SWPSSL+ L+F F+Q Sbjct: 6 QRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTS-------TRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLEMMSWPSSLKSLTFAGIFDQ 166
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.820e-33 Identity = 73/146 (50.00%), Postives = 94/146 (64.38%), Query Frame = 1 Query: 4 RRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGS-MFWLKKLNWLALELDTPV 438 R CLDAF++AL+Q C+GG++RWYASTLELQL SL C ACR LHV VD QTPRSLWS R + T + R ++I SRVP V+A LTW L E LL+ +AIE + S + G S ++LGS + W + L L L D+ + Sbjct: 8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDI 153
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 134 bits (336), Expect = 5.040e-33 Identity = 73/151 (48.34%), Postives = 88/151 (58.28%), Query Frame = 1 Query: 1 GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELDTPVNNTSW 453 G LD IVALNQ CDG ++RWY STLELQLVSL CGACR LHV V + TP +LWS R S TT S+R EV +RVPAVQA TW LP + L Q +A EP + + +G S AA++ S+ W + L L P W Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMPGKAVWW 235
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 130 bits (328), Expect = 7.780e-33 Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 1 Query: 1 GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELD 429 G DAF +AL+Q C+GG++RWY ST ELQL SL C ACR PTLHVRV TP SLWSP + + +V +VSRVP V+A LTW E L+Q +AIE S S M G AA+LGS+ W L L L+ D Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTD 147
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 129 bits (323), Expect = 1.590e-32 Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1 Query: 4 RRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREV 231 R +CLDAF+VALNQTCDG ++RWYASTLELQLVSL FCGACR VPTLHVRVD++TPRSLWSPR + TA KR R+V Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Match: A0A6H5L3M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M5_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.830e-31 Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 13 CLDAFIVALN-QTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVRVDQQTPRSLWSPRQSHTTASKRGREVYIVSRVPAVQAFGLTWGLPTEVLLQSSAIEPTSGSAYQRMNGQSSAANLGSMFWLKKLNWLALELDTPVNNTSWPSSLQQLSFGDRFNQ 498 CLDAF+ LN Q+C GK+RWY S ELQLVSL FCG CR L VRV+ P SLWSP +S + A +RVPAV+A+G TW +P + LL+ + + + R G A L S+ W + L L +LDT V SWP+SLQ L+FG FNQ Sbjct: 103 CLDAFVAVLNHQSCVEGKKRWYTSIRELQLVSLKFCGVCRSTSILRVRVEHNAPPSLWSPTKSFSYALPDAW-----NRVPAVRAYGWTWSIPVDTLLKVCDLRYWAKAELSR-RGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQ 259 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10146.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10146.173.1 >prot_Ecto-sp13_S_contig10146.173.1 ID=prot_Ecto-sp13_S_contig10146.173.1|Name=mRNA_Ecto-sp13_S_contig10146.173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=425bp GRRECLDAFIVALNQTCDGGKRRWYASTLELQLVSLAFCGACRCVPTLHVback to top mRNA from alignment at Ecto-sp13_S_contig10146:4468..5742- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10146.173.1 ID=mRNA_Ecto-sp13_S_contig10146.173.1|Name=mRNA_Ecto-sp13_S_contig10146.173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10146:4468..5742- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10146:4468..5742- >mRNA_Ecto-sp13_S_contig10146.173.1 ID=mRNA_Ecto-sp13_S_contig10146.173.1|Name=mRNA_Ecto-sp13_S_contig10146.173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10146:4468..5742- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |