mRNA_Ecto-sp13_S_contig10144.172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: D8LQ70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ70_ECTSI) HSP 1 Score: 506 bits (1303), Expect = 1.790e-173 Identity = 274/301 (91.03%), Postives = 282/301 (93.69%), Query Frame = 1 Query: 1 VRTMRQDKHTGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVMSMSKQEEEEPHHASRAGPHGGGNTDG-----SGNKNAGVTGYVRKSGPKPRAFSDEGSRHQADPATSGTVGAVGAGTKAAGRITLSPSKFRRGLPTGASLKILQAATGVSMTTSSTTSTPMRGRHTEDKPLEAHEASPREDTGAGASAVGANGTAEETGISMVAATHPDPSSRVLGDGTGDAESN-RPPEDDALENSTPKTAAL 885 V ++DKHTGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVMSMSKQEEEEPHHASRA PHGGGNTDG SGN AGVTGYVRKSGPKPRAFSDEGSRHQADPATSG+VGAVGAGTKAAGRITLSPSK RRGLPTGASLKILQAATGV+MTTSSTTSTPMR +HTED+PLEA EASPREDTGAGASAV +NGTAEETGISMVAAT P PSSRV GDGTGDAESN RPPEDDAL+NSTPKTAAL Sbjct: 427 VEVNKEDKHTGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVMSMSKQEEEEPHHASRAEPHGGGNTDGNNTDGSGNNKAGVTGYVRKSGPKPRAFSDEGSRHQADPATSGSVGAVGAGTKAAGRITLSPSKIRRGLPTGASLKILQAATGVAMTTSSTTSTPMRSKHTEDEPLEAQEASPREDTGAGASAVASNGTAEETGISMVAATRPVPSSRVSGDGTGDAESNCRPPEDDALDNSTPKTAAL 727
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A835YX11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX11_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.370e-25 Identity = 53/93 (56.99%), Postives = 74/93 (79.57%), Query Frame = 1 Query: 1 VRTMRQDKHTGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASF 279 V T+R++ G + PA A+ LYRRGR ST CTL+LTG++ V AGRD F+S++GPW+VLGADAL+ EGAY+PDFSA S++LR +R+++A+F Sbjct: 376 VVTLRREASAG-AAPAAADYLYRRGRVSTACTLVLTGRLTVAAGRDAFQSESGPWSVLGADALLAAEGAYRPDFSASISSDQLRVIRMNRATF 467
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A7S2SUL8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUL8_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.990e-24 Identity = 48/94 (51.06%), Postives = 73/94 (77.66%), Query Frame = 1 Query: 31 GRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASF-DTVMSMSKQE 309 G S+P ++LYRRGR S+ TL+L+G++ V+AG+DGFRSDAGPWTVLG DAL+++EG Y PDF+A+ +E +RC+R+S+ F ++ +S ++ Sbjct: 476 GTSDPPGKDMLYRRGRASSTMTLVLSGRLAVVAGKDGFRSDAGPWTVLGCDALLQEEGGYIPDFTAYIATENVRCIRMSRFDFAQAILKLSVED 569
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A835ZG32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG32_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.660e-22 Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 Query: 46 APAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTV 288 A + LYRRGR S CTL+LTG++ V AGRD F SDAGPW+VL ADAL+ EG YKPDFSA S+ LR VR+S+A+F+ V Sbjct: 510 AAEDYLYRRGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVV 590
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A835Z946_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z946_9STRA) HSP 1 Score: 100 bits (248), Expect = 4.330e-22 Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 70 RGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTV 288 RGR S CTL+LTG++ V AGRD F SDAGPW+VL ADAL+ EG YKPDFSA S+ LR VR+S+A+F+ V Sbjct: 3 RGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVV 75
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A7S3ZR18_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR18_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.130e-20 Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 61 LYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVM 291 +Y RG ++ TL+L GK+ VLAG DGFR++AGPWTVLGADALV DEG++ PDFSAH ++ +RCV +++A ++ + Sbjct: 494 IYVRGEAASYATLVLNGKLSVLAGVDGFRAEAGPWTVLGADALVSDEGSFVPDFSAHVATDSVRCVHVTRAEYERAI 570
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A7S3JS20_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS20_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.100e-18 Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1 Query: 46 APAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVMSMS 300 +P +++Y R + L+L GK+ VLAG+DGFRS+AGPWTVLGADALV Y+PDFSAH ++ +R V I +A + ++S Sbjct: 544 SPKDIVYNRNEPADFAVLVLGGKLTVLAGKDGFRSEAGPWTVLGADALVSKAKEYRPDFSAHVATDTVRLVYIQRADYAHAFALS 628
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A7S4D856_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D856_HETAK) HSP 1 Score: 87.8 bits (216), Expect = 9.600e-16 Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 37 SEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVE-DEGAYKPDFSAHAGSERLRCVRISK 270 +EPAP E LYRRG + L+L+GK++V AGRDGFR++AGPWT L A AL + PDF A+AG+E +R +R+ + Sbjct: 460 AEPAPEEFLYRRGEVAAAAALVLSGKLLVRAGRDGFRAEAGPWTALAAGALTAATPQGFAPDFDAYAGAEPVRLLRVPR 538
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A7S1B913_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B913_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.050e-15 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1 Query: 28 TGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVM 291 +G++ P+ +LY RG+ + +CTL+L GK+ +LAG+DGFRS+ GPW+VL A ALV Y PDF A SE+ R +R F + Sbjct: 476 SGKNMPSSQNLLYERGQETEVCTLLLNGKITILAGKDGFRSEVGPWSVLAAQALVAP--GYVPDFDAFVASEKCRMLRFQLPRFHVAV 561
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Match: A0A8J2SRJ6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRJ6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.270e-15 Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1 Query: 43 PAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKA 273 P P++V+Y RG + TL+L+GK+ V AG DGFR++AGPWT+LGA AL ++ + PDFSAH ++ +RCV +S A Sbjct: 440 PEPSDVVYERGFPANFATLVLSGKLSVKAGVDGFRAEAGPWTLLGAGALRHED--FVPDFSAHVATDSVRCVYLSHA 514 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10144.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10144.172.1 >prot_Ecto-sp13_S_contig10144.172.1 ID=prot_Ecto-sp13_S_contig10144.172.1|Name=mRNA_Ecto-sp13_S_contig10144.172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp MRQDKHTGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGback to top mRNA from alignment at Ecto-sp13_S_contig10144:4114..5656- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10144.172.1 ID=mRNA_Ecto-sp13_S_contig10144.172.1|Name=mRNA_Ecto-sp13_S_contig10144.172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10144:4114..5656- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10144:4114..5656- >mRNA_Ecto-sp13_S_contig10144.172.1 ID=mRNA_Ecto-sp13_S_contig10144.172.1|Name=mRNA_Ecto-sp13_S_contig10144.172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10144:4114..5656- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |