mRNA_Ecto-sp13_S_contig10144.171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA) HSP 1 Score: 206 bits (523), Expect = 1.940e-66 Identity = 106/113 (93.81%), Postives = 108/113 (95.58%), Query Frame = 1 Query: 52 LLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
+ N P +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 13 FVSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A7S0ICQ7_MICPS (Histone H4 n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A7S0ICQ7_MICPS) HSP 1 Score: 202 bits (515), Expect = 2.250e-65 Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 58 HKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
HK+T NMSGRGKGGK LGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 4 HKHTNSNNMSGRGKGGKXLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 114
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A446IM63_TRITD (Histone H4 n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446IM63_TRITD) HSP 1 Score: 204 bits (518), Expect = 3.090e-65 Identity = 115/137 (83.94%), Postives = 117/137 (85.40%), Query Frame = 1 Query: 4 LASPSPPPA-HNNNYLPLL--HKNTPYTN-----MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
L PSPPPA H N PLL H T MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 20 LKIPSPPPANHKTNSPPLLDLHPLAARTKERASAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 156
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS) HSP 1 Score: 201 bits (510), Expect = 1.440e-64 Identity = 106/115 (92.17%), Postives = 108/115 (93.91%), Query Frame = 1 Query: 52 LLHKNTPYTN--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
LLH TP MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 3 LLHFQTPSAPPIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A7S4DKQ9_9EUKA (Histone H4 n=4 Tax=Chlorarachniophyceae TaxID=29197 RepID=A0A7S4DKQ9_9EUKA) HSP 1 Score: 200 bits (509), Expect = 1.910e-64 Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 1 Query: 49 PLLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
P HK T MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE+VIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 2 PNDHKPTRTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLESVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 115
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A5D2MDG6_GOSTO (Histone H4 (Fragment) n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2MDG6_GOSTO) HSP 1 Score: 201 bits (512), Expect = 2.020e-64 Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 1 Query: 55 LHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
L K+ ++ MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 38 LEKSFDFSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 149
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A8B8CHU8_CRAVI (Histone H4 n=4 Tax=Bilateria TaxID=33213 RepID=A0A8B8CHU8_CRAVI) HSP 1 Score: 204 bits (518), Expect = 2.080e-64 Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 1 Query: 43 YLPLLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
YL L ++T NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 100 YLVGLFEDTNLANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 215
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A7S3CDM2_9CHLO (Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S3CDM2_9CHLO) HSP 1 Score: 201 bits (510), Expect = 2.340e-64 Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1 Query: 52 LLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
L ++ TP T MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 21 LPNEETPAT-MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 132
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: W5QFR6_SHEEP (Histone H4 n=4 Tax=Laurasiatheria TaxID=314145 RepID=W5QFR6_SHEEP) HSP 1 Score: 199 bits (507), Expect = 3.080e-64 Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 1 Query: 67 TPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
T Y MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 TSYKAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 108
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Match: A0A4D9CLB0_9STRA (Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA) HSP 1 Score: 200 bits (508), Expect = 3.090e-64 Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = 1 Query: 52 LLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 390
LL T MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct: 7 LLPSRDNLTAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 119 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10144.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10144.171.1 >prot_Ecto-sp13_S_contig10144.171.1 ID=prot_Ecto-sp13_S_contig10144.171.1|Name=mRNA_Ecto-sp13_S_contig10144.171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp PLASPSPPPAHNNNYLPLLHKNTPYTNMSGRGKGGKGLGKGGAKRHRKVLback to top mRNA from alignment at Ecto-sp13_S_contig10144:2558..2950+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10144.171.1 ID=mRNA_Ecto-sp13_S_contig10144.171.1|Name=mRNA_Ecto-sp13_S_contig10144.171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10144:2558..2950+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10144:2558..2950+ >mRNA_Ecto-sp13_S_contig10144.171.1 ID=mRNA_Ecto-sp13_S_contig10144.171.1|Name=mRNA_Ecto-sp13_S_contig10144.171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10144:2558..2950+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |