mRNA_Ecto-sp13_S_contig10142.169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A6H5L225_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L225_9PHAE) HSP 1 Score: 417 bits (1071), Expect = 4.350e-139 Identity = 299/319 (93.73%), Postives = 302/319 (94.67%), Query Frame = 1 Query: 4 DDSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRESRGKAGNDRAASERLQEDANRQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQKGVDAILDLEPREXXXXXXXXXXXXDPFGNDVYDVQAQPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------NDAGGKDNQAISNRDFGNGGGGGMAPDGRLYQH 939
+DSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQ+RGVGPDSLLPNESLRAGVDEYLTRVTRESRGKAGN+RAASERLQEDANRQ XXXXXXXXXXXXXXXXXXXXXXXXXXXX PQKGVDAILDLEPRE XXXXXXXXXXXDPFGNDVYDVQAQPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NDAG DNQAISNRDFGNGGGGGM PDGRLYQH
Sbjct: 84 NDSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQSRGVGPDSLLPNESLRAGVDEYLTRVTRESRGKAGNERAASERLQEDANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKRLPQKGVDAILDLEPREEXXXXXXXXXXXDPFGNDVYDVQAQPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAGSNDNQAISNRDFGNGGGGGMGPDGRLYQH 402
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: D8LMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD5_ECTSI) HSP 1 Score: 309 bits (791), Expect = 3.240e-97 Identity = 246/321 (76.64%), Postives = 247/321 (76.95%), Query Frame = 1 Query: 4 DDSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRESRGKAGNDRAASERLQEDANRQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQKGVDAILDLEPREXXXXXXXXXXXXDPFGNDVYDVQAQPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NDAGGKDNQAISNRDFGNGGGGG-------MAPDGRLYQH 939
+DSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE XXXXXXXXXXXXXXXXX QKGVDAILDLEPREXXXXXXXXXXXXDPFGNDVYDVQAQPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NDAGG DNQA SN DFGN M PDGRLYQH
Sbjct: 74 NDSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNEEXXXXXXXXXXXXX-----------------------------------------XXXXXXXXXXXXXXXXXXQKGVDAILDLEPREXXXXXXXXXXXXDPFGNDVYDVQAQPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAGGYDNQANSNHDFGNXXXXXXXXXXXXMGPDGRLYQH 353
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A836CNQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ4_9STRA) HSP 1 Score: 171 bits (433), Expect = 1.110e-41 Identity = 84/166 (50.60%), Postives = 125/166 (75.30%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAFRKLKEF-GGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRESRGKAGNDRAASERLQE 501
D +YDNTR KR++G+P++M+++++ +++GGGLV+A G+ V +++N +AF KLK+ GGG LLD+LS +AP+HLKCP+C I+ DAV++PCC S CDSCVR AL A+ SM CPLC GV PD L+PN SLRA D+++ R+T+++R +A R A+ +LQ+
Sbjct: 267 DPNYDNTRRKRILGVPSTMLQVAE-EQKGGGLVDAMGRRVVLKSNKEAFAKLKDLKGGGGGGAQLLDQLSAAAPEHLKCPLCRNIVQDAVLVPCCQGSACDSCVRDALAAN-SMQCPLCSRPGVTPDQLIPNRSLRAAADDFVARMTKDARARADLAREAALQLQQ 430
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A8K1C5H0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5H0_PYTOL) HSP 1 Score: 116 bits (290), Expect = 1.990e-23 Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIK-LSDGDR----QGGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D +D+ R+KR GIP S +K +SD G +VNA G L I ++ F KL GG + LD+L + P HL CP+C ++M+DAV++PCC +S CD C+R AL +++CPLC T + P+ LLPN+ LRA V+E+L R E
Sbjct: 267 DPEFDHHRVKRRTGIPKSFMKAVSDPSEIPVGAGKTVVNAPWGGLAVIETQNKNFSKLMTKSGGSAT---LDQLISNPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSAL-IDHNLTCPLCNTPNMSPEKLLPNKVLRASVEEFLRRARTE 416
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: K3X144_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X144_GLOUD) HSP 1 Score: 114 bits (286), Expect = 3.090e-23 Identity = 62/154 (40.26%), Postives = 87/154 (56.49%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIKLSDGDRQ-----GGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D YD R+K+ GIP S +K + + G +VNA G L I ++ F KL GG + LD+ + P HL CP+C ++M+DAV++PCC +S CD C+R AL ++CPLC T + P+ LLPN+ LR VDE+L R E
Sbjct: 269 DPEYDQHRVKKKTGIPKSFMKAVNDPSEIPVGAGKTVVNAPWGGLAVIEPQNKNFSKLMAKSGGSAT---LDQFIANPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSAL-IEKKLTCPLCNTTNMSPEKLLPNKVLRTSVDEFLRRARTE 418
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A3R7NI29_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NI29_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.230e-23 Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIK-LSDGDR----QGGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D YD R+K+ GIP S +K +SD G +VNA G L I ++ F KL GG + LD+ + P+HL CP+C ++MSDAV++PCC +S CD C+R AL ++CPLC + P+ LLPN+ LR VDE+L R E
Sbjct: 275 DPEYDQHRVKKKTGIPKSFMKAVSDPSEIPVGAGKTVVNAPWGGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVTNMSPEKLLPNKVLRTSVDEFLRRARTE 424
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A421G8I3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G8I3_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.970e-23 Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIK-LSDGDR----QGGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D YD R+K+ GIP S +K +SD G +VNA G L I ++ F KL GG + LD+ + P+HL CP+C ++MSDAV++PCC +S CD C+R AL ++CPLC + P+ LLPN+ LR VDE+L R E
Sbjct: 275 DPEYDQHRVKKKTGIPKSFMKAVSDPSEIPVGAGKTVVNAPWGGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVTNMSPEKLLPNKVLRTSVDEFLRRARTE 424
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A2P4Y5F3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y5F3_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.330e-23 Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIK-LSDGDR----QGGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D +D R+K+ GIP S +K +SD G +VNA G L I ++ F KL GG + LD+ + P+HL CP+C ++MSDAV++PCC +S CD C+R AL ++CPLC + P+ LLPN+ LR VDE+L R E
Sbjct: 272 DPEFDQHRVKKKTGIPKSFMKAVSDPSEIPVGAGKTVVNAPWGGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNKVLRTSVDEFLRRARTE 421
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: A0A6A4FP78_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FP78_9STRA) HSP 1 Score: 114 bits (285), Expect = 6.670e-23 Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIK-LSDGDR----QGGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D +D R+K+ GIP S +K +SD G +VNA G L I ++ F KL GG + LD+ + P+HL CP+C ++MSDAV++PCC +S CD C+R AL ++CPLC + P+ LLPN+ LR VDE+L R E
Sbjct: 273 DPEFDQHRVKKKTGIPKSFMKAVSDPSEIPVGAGKTVVNAPWGGLAVIEPQNKNFSKLMALSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNKVLRTSVDEFLRRARTE 422
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Match: D0NE99_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NE99_PHYIT) HSP 1 Score: 113 bits (282), Expect = 1.170e-22 Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 7 DSSYDNTRLKRVVGIPTSMIK-LSDGDR----QGGGLVNAS-GQLVTIRANDQAFRKLKEFGGGQSVQGLLDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNESLRAGVDEYLTRVTRE 450
D +D R+K+ GIP S +K +SD G +VNA G L I ++ F KL GG + LD+ + P+HL CP+C ++MSDAV++PCC +S CD C+R AL ++CPLC + P+ LLPN+ LR VDE+L R E
Sbjct: 265 DPEFDQHRVKKKTGIPKSFMKAVSDPSEIPVGAGKTVVNAPWGGLAVIEPQNKNFSKLMARSGGSAT---LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNKVLRTSVDEFLRRARTE 414 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10142.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10142.169.1 >prot_Ecto-sp13_S_contig10142.169.1 ID=prot_Ecto-sp13_S_contig10142.169.1|Name=mRNA_Ecto-sp13_S_contig10142.169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=533bp TDDSSYDNTRLKRVVGIPTSMIKLSDGDRQGGGLVNASGQLVTIRANDQAback to top mRNA from alignment at Ecto-sp13_S_contig10142:694..5053- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10142.169.1 ID=mRNA_Ecto-sp13_S_contig10142.169.1|Name=mRNA_Ecto-sp13_S_contig10142.169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10142:694..5053- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10142:694..5053- >mRNA_Ecto-sp13_S_contig10142.169.1 ID=mRNA_Ecto-sp13_S_contig10142.169.1|Name=mRNA_Ecto-sp13_S_contig10142.169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10142:694..5053- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |