mRNA_Ecto-sp13_S_contig10135.163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: D8LF32_ECTSI (Imm upregulated 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF32_ECTSI) HSP 1 Score: 154 bits (390), Expect = 4.750e-47 Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 2 Query: 8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECGDDGSSSCDPGYACVCDFEVEIDVDTSALVAGTASE 274
MFGKVWALPLCTLMVAIFSASSAF QGSCSCGGPTS SVSTAT +NLIDPLECGDDG++SCD YACVCDF +EI+VDTS LVAGTA+E
Sbjct: 1 MFGKVWALPLCTLMVAIFSASSAFGQGSCSCGGPTSGSVSTATISNLIDPLECGDDGTASCDSDYACVCDFGIEINVDTSGLVAGTATE 89
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.510e-17 Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 2 Query: 8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECGD-DGSSSCDPGYACVCDFEVEIDVDTSALVAGT 265
M+ KVW LPLCT+MVA FSAS AF Q +CSCGGPT DS S A ID L+CG DG++ C G CVC++++ IDVD A +AGT
Sbjct: 1 MWAKVWILPLCTMMVATFSASFAFGQ-TCSCGGPTVDSPSVAD----IDVLQCGAADGTTDCG-GNICVCNYDISIDVDLVAFLAGT 81
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: D7G5L1_ECTSI (Imm upregulated 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L1_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 4.440e-14 Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECGDDGSS--SCDPGYACVCDFEVEIDV 238
M+G+VW LPLCT++V I SA SA CSCGGPTSD A ID LECG DG CD G CVC+ E+ V
Sbjct: 1 MWGRVWVLPLCTVIVVILSAPSA-SGAPCSCGGPTSD----APLDTAIDVLECGSDGDGPLQCDDGVVCVCNLSPEVAV 74
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: A0A6H5JZQ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ2_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 7.630e-14 Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 2 Query: 5 KMFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECG--DDGSSSC-DPGY-ACVCDFEVEIDVDTSALVAGTASE 274
+M GK+W LPL T+MVAIFSA F G C+CGGPT ST ++ID + CG +G SC D G AC+CD+ V I+VD +AG A E
Sbjct: 46 RMRGKLWTLPLHTVMVAIFSAP--FVSGECACGGPTESQPST----DMIDVVSCGATTEGQKSCTDIGEKACLCDYTVSIEVDLIDFLAGEAEE 133
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 9.720e-14 Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 2 Query: 8 MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPLECG--DDGSSSC-DPG-YACVCDFEVEIDVDTSALVAGTASE 274
M GK W LPL T+MVAIFSA F G C CGGPT S A +ID L CG +G ++C D G AC+CD+E+ IDVD +AG A E
Sbjct: 1 MRGKFWTLPLHTVMVAIFSAP--FVSGECECGGPTMSEPS----AEMIDVLSCGATTEGQTTCTDLGEIACLCDYEISIDVDVRDFLAGAAEE 87 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10135.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10135.163.1 >prot_Ecto-sp13_S_contig10135.163.1 ID=prot_Ecto-sp13_S_contig10135.163.1|Name=mRNA_Ecto-sp13_S_contig10135.163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp MFGKVWALPLCTLMVAIFSASSAFEQGSCSCGGPTSDSVSTATHANLIDPback to top mRNA from alignment at Ecto-sp13_S_contig10135:2728..3001+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10135.163.1 ID=mRNA_Ecto-sp13_S_contig10135.163.1|Name=mRNA_Ecto-sp13_S_contig10135.163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10135:2728..3001+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10135:2728..3001+ >mRNA_Ecto-sp13_S_contig10135.163.1 ID=mRNA_Ecto-sp13_S_contig10135.163.1|Name=mRNA_Ecto-sp13_S_contig10135.163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10135:2728..3001+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |