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Homology
BLAST of mRNA_Ecto-sp13_S_contig101344.162.1 vs. uniprot
Match: Q8QNL0_ESV1K (EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL0_ESV1K) HSP 1 Score: 121 bits (303), Expect = 1.680e-34 Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 MEANLAPRQSPPPL---------VQPHGVTFRHSDDTWYSENEDELLDIWHAVQDTIRSRGIVMLDKCRFNHFCAFV 204
M AN PRQ+P VQP GVTFRHSDDTWYSENEDELLDIWHAVQD I+SRGIVMLDKCRFNHFCAFV
Sbjct: 1 MNANSPPRQTPXXXXXXXXXXXXVQPQGVTFRHSDDTWYSENEDELLDIWHAVQDIIKSRGIVMLDKCRFNHFCAFV 77
BLAST of mRNA_Ecto-sp13_S_contig101344.162.1 vs. uniprot
Match: D8LP94_ECTSI (EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP94_ECTSI) HSP 1 Score: 120 bits (301), Expect = 3.400e-34 Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 1 MEANLAPRQSPPPL---------VQPHGVTFRHSDDTWYSENEDELLDIWHAVQDTIRSRGIVMLDKCRFNHFCAFV 204
MEAN RQ+PPP V+P GVTFRHSDDTWYSENED+LLDIWH +QD I+SRGIVMLDKCRFNHFCAFV
Sbjct: 1 MEANAPLRQTPPPXXXXXXXLPPVKPQGVTFRHSDDTWYSENEDDLLDIWHTLQDIIKSRGIVMLDKCRFNHFCAFV 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101344.162.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| Q8QNL0_ESV1K | 1.680e-34 | 75.32 | EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (i... | [more] |
| D8LP94_ECTSI | 3.400e-34 | 72.73 | EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 204 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Ec32 ortholog description | EsV-1-61 |
| Ec32 ortholog | Ec-06_006180.1 |
| Cds size | 204 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462510.0231702-CDS-Ecto-sp13_S_contig101344:300..504 | 1681462510.0231702-CDS-Ecto-sp13_S_contig101344:300..504 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig101344 301..504 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101344.162.1 >prot_Ecto-sp13_S_contig101344.162.1 ID=prot_Ecto-sp13_S_contig101344.162.1|Name=mRNA_Ecto-sp13_S_contig101344.162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MEANLAPRQSPPPLVQPHGVTFRHSDDTWYSENEDELLDIWHAVQDTIRS
RGIVMLDKCRFNHFCAFV back to topmRNA from alignment at Ecto-sp13_S_contig101344:301..504+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig101344.162.1 ID=mRNA_Ecto-sp13_S_contig101344.162.1|Name=mRNA_Ecto-sp13_S_contig101344.162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101344:301..504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCGAATTTAGCCCCGCGACAGTCACCACCACCACTAGTGCAACC
ACATGGTGTCACATTTAGACACTCGGACGACACGTGGTACTCAGAAAACG
AAGACGAACTGCTCGATATTTGGCACGCTGTACAAGACACCATCCGAAGT
AGAGGAATTGTTATGTTGGATAAATGCAGGTTTAATCATTTTTGTGCGTT
CGTG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig101344:301..504+ >mRNA_Ecto-sp13_S_contig101344.162.1 ID=mRNA_Ecto-sp13_S_contig101344.162.1|Name=mRNA_Ecto-sp13_S_contig101344.162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101344:301..504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCGAATTTAGCCCCGCGACAGTCACCACCACCACTAGTGCAACC
ACATGGTGTCACATTTAGACACTCGGACGACACGTGGTACTCAGAAAACG
AAGACGAACTGCTCGATATTTGGCACGCTGTACAAGACACCATCCGAAGT
AGAGGAATTGTTATGTTGGATAAATGCAGGTTTAATCATTTTTGTGCGTT
CGTG back to top
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