mRNA_Ecto-sp13_S_contig10125.153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI) HSP 1 Score: 213 bits (542), Expect = 2.080e-61 Identity = 118/123 (95.93%), Postives = 123/123 (100.00%), Query Frame = 1 Query: 28 GVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTSTCRAGYFCKTGVGNPTPN 396 GVTGYPCPRGTYCPAGSSFP+GCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLV+ESECSPCPPG+YCLDG+VTSTCRAGYFCKTG+GNPTPN Sbjct: 2951 GVTGYPCPRGTYCPAGSSFPHGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVAESECSPCPPGHYCLDGNVTSTCRAGYFCKTGIGNPTPN 3073
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: T0S7D3_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S7D3_SAPDV) HSP 1 Score: 88.2 bits (217), Expect = 1.230e-17 Identity = 65/125 (52.00%), Postives = 79/125 (63.20%), Query Frame = 1 Query: 28 GVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTG--VGNP 387 GVTG+ CP G YCP GS+FP GCAPGTY+P +C+ C G CP NT+ P XXXXXXXXXXXXXXXXXXX + +L S S+C+ C PG +C +T C +GY C G + NP Sbjct: 178 GVTGFACPPGNYCPMGSAFPVGCAPGTYSPLLGAGSCLGCPTGFFCPQNTSVPIXXXXXXXXXXXXXXXXXXXXATYSNVVNLTSSSQCALCSPGAFCNATGLTQPTGLCASGYVCTGGSPIANP 302
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A6A4ZXM6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZXM6_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.240e-17 Identity = 65/124 (52.42%), Postives = 75/124 (60.48%), Query Frame = 1 Query: 31 VTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTGVGNPTP 393 VTGY CP G +C GSSFP GCAPG+Y+P AC+DC G CP NT+ P XXXXXXXXXXXXXXXXXXXX + L + S+C C PG YC + + C GY C G P P Sbjct: 2277 VTGYACPAGMFCVRGSSFPIGCAPGSYSPFPGAAACLDCPIGAYCPQNTSVPVPXXXXXXXXXXXXXXXXXXXXTYSNNTMLTTTSQCMACSPGSYCNASGLVAPSGPCLPGYVCVGGAPIPNP 2400
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A7M7NCN3_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NCN3_STRPU) HSP 1 Score: 85.9 bits (211), Expect = 7.960e-17 Identity = 54/138 (39.13%), Postives = 72/138 (52.17%), Query Frame = 1 Query: 4 AESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTGVGNPTPNRCAR 408 A S+ P DG TG CP G YCPAGSS P C PGTY + EAC+ C PG C + + XXXXXXXXX L +E++C+ C G+YC + T+ C AG++C++G P+ +R Sbjct: 4374 ATSASPTDGDTGDECPVGHYCPAGSSQPIQCEPGTYTDTTQNEACLQCTPGHYCITGSNPEDXXXXXXXXXXTGHVWQSCPIGTFSSSTGLANETQCTQCTAGHYCDMVNATTVAGDCDAGFYCRSGSDARQPSESSR 4511
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI001FEDF4A2 (zonadhesin n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEDF4A2) HSP 1 Score: 85.1 bits (209), Expect = 1.460e-16 Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTT-PEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCL---DGDVTSTCRAGYFCKTGVGNPTP 393 G+ S++PVDG+ GY CP G +S C PGTY+ + C+ C G +CP + T P XXXXXXXXXXX SESEC PCPPG+YC C+AGYFC++G +P P Sbjct: 1835 GSRSARPVDGLEGYICPIGXXXXXXTSVEMPCEPGTYSSAPGAAHCLSCPSGSMCPSSATKDPTSXXXXXXXXXXXALALPCPIGTLGQVTRAQSESECVPCPPGFYCSVPGTSQPQGQCQAGYFCQSGSSDPAP 1969
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI001455CDB0 (multiple epidermal growth factor-like domains protein 6 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CDB0) HSP 1 Score: 83.2 bits (204), Expect = 6.710e-16 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 1 Query: 4 AESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTGVGNPTPNRCAR 408 A + PVDG+TG CP G +CPAG+S P C PGTY +E C C PG C T + XXXXXXXXX ++ L +E++C+ C G+YC + TS C AG++C+ G + TP+ +R Sbjct: 1308 ASVAAPVDGITGDICPIGFHCPAGTSSPVPCDPGTYTDTEQNALCDLCTPGHYCTMGTNPQDXXXXXXXXXXTGHVWQSCPLGTFSNQTGLSNETQCTQCTFGFYCDQLNATSESGLCAAGHYCRLGSDSRTPSVLSR 1445
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI00148A378A (uncharacterized protein LOC105348209 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A378A) HSP 1 Score: 78.6 bits (192), Expect = 2.890e-14 Identity = 51/139 (36.69%), Postives = 65/139 (46.76%), Query Frame = 1 Query: 1 GAES-SQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTT----PEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDV---TSTCRAGYFCKTGVGNPTP 393 GA+S + PV TG PCP G+YCP G+S+P GC GTYNPS + C+ P N+TT XXXXX D S ++C PC PG YC + T C AG++C G + P Sbjct: 3380 GAQSPNNPVVDSTGGPCPIGSYCPNGTSYPLGCPAGTYNPSTGLAECIQXXXXXXXPENSTTYTGNDXXXXXXXLAGTGSMNQYPCSIGTYNDYTGKQSSADCVPCEPGKYCATPGLSLPTGDCTAGWYCVRGAWSDQP 3518
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A3M0IUE0_HIRRU (Uncharacterized protein n=1 Tax=Hirundo rustica rustica TaxID=333673 RepID=A0A3M0IUE0_HIRRU) HSP 1 Score: 77.4 bits (189), Expect = 7.040e-14 Identity = 52/131 (39.69%), Postives = 61/131 (46.56%), Query Frame = 1 Query: 1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTSTCRAGYFCKTGVGNPTP 393 G S P DG+ GY CP G+YCPAGS C PGT++P C+ T XX X XXXXXXX + L +E EC PC PG+YC G + C AGYFC G P Sbjct: 777 GNSSPCPSDGIHGYRCPSGSYCPAGSGLELPCEPGTFSPVPGASTCLXXXXXXXXXSAGTV---QPLAXXRXTRVPXXXXXXXFTPENVTGLWNEKECLPCLPGHYCRHGKLEGKCAAGYFCLAGSSQAAP 904
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI001B7E219B (SCO-spondin n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7E219B) HSP 1 Score: 77.4 bits (189), Expect = 7.250e-14 Identity = 54/147 (36.73%), Postives = 64/147 (43.54%), Query Frame = 1 Query: 1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDV---TSTCRAGYFC-------------KTGVGNPTP 393 GAE+S PVDGV+G CP+G YCP GS P C G+Y C+DC G C + XXXXXXX +C CP G YC D + T +C+AGYFC TGVG P P Sbjct: 651 GAETSMPVDGVSGDRCPKGLYCPKGSVLPLPCPDGSYTNITGAAECLDCPAGYYCLSGQSVQLXXXXXXXXGGTGLDRLPCPPGTYSPEPGNSQLEQCLLCPAGMYCEDWGLSVPTGSCQAGYFCLAGMNFRNPDGNISTGVGGPCP 797
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A8K1GBP5_9PASS (Uncharacterized protein (Fragment) n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1GBP5_9PASS) HSP 1 Score: 76.3 bits (186), Expect = 1.830e-13 Identity = 65/135 (48.15%), Postives = 75/135 (55.56%), Query Frame = 1 Query: 1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKIC-PGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYC---LDGDVTSTCRAGYFCKTGVGNPTP 393 G S P DG+ GYPCP G+YCP GS C PGT++P C+ C G C T P XXXXXXXXXXXXXXXXXXXXXXX V+ + C CP G YC + + C GYFC G + TP Sbjct: 2552 GNSSPCPSDGIHGYPCPSGSYCPQGSGLELPCEPGTFSPLPGASTCLPCPAGTSCGSAGTVQPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPTACRQCPVGRYCRGEANWEPDGLCSPGYFCDRGATDATP 2686 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10125.153.1 >prot_Ecto-sp13_S_contig10125.153.1 ID=prot_Ecto-sp13_S_contig10125.153.1|Name=mRNA_Ecto-sp13_S_contig10125.153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLback to top mRNA from alignment at Ecto-sp13_S_contig10125:411..1290+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10125.153.1 ID=mRNA_Ecto-sp13_S_contig10125.153.1|Name=mRNA_Ecto-sp13_S_contig10125.153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=880bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10125:411..1290+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10125:411..1290+ >mRNA_Ecto-sp13_S_contig10125.153.1 ID=mRNA_Ecto-sp13_S_contig10125.153.1|Name=mRNA_Ecto-sp13_S_contig10125.153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10125:411..1290+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |