mRNA_Ecto-sp13_S_contig10116.147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 431 bits (1109), Expect = 1.070e-151 Identity = 212/220 (96.36%), Postives = 214/220 (97.27%), Query Frame = 1 Query: 7 SSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDSR 666 SSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQ DQSSQVTFPEPLG RSNEGYRIRIAEVGSD YRCSDDFYLMSSADAPA GE+GGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLY AL EDGAGDCGTWVTSVCDKPDVGCLDS+ Sbjct: 2 SSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQ 221
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 332 bits (850), Expect = 1.880e-112 Identity = 165/220 (75.00%), Postives = 188/220 (85.45%), Query Frame = 1 Query: 10 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAE-CGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDSR 666 SSVA L ALAG+LG+T ITSTEAL+VLTPAVAE+V SGRPY+VSW GA ADDRFE+DLHYCGSYS+CF EAE CGFW+ANVC E D + CM QDDQSSQVTFPEP+ SN GYR+RI+EVG+D +RCS+DFYL++SAD GE GGPT+EVVAP A+ALA+AGE YTVEFDYDNGFGEQLGRFKIDLY A +G GDCG+WVTSVCDKPD+GC DS Sbjct: 3 SSVAFLTALAGVLGNT-ITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDA-CMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA---EGNGDCGSWVTSVCDKPDMGCRDSE 217
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 306 bits (785), Expect = 8.090e-103 Identity = 154/220 (70.00%), Postives = 180/220 (81.82%), Query Frame = 1 Query: 10 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEA-ECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDSR 666 SSVA + AL G+LG+ IT TEAL+VLTPAVAETVVS PYIVSW GAS DDRFEIDLHYCGSYS+CFEEA ECGFW+ N+CAEGD + CM+QDD SQVT PEP+ SN GYR+RI +VG++ +RCSD+FYLMSSADA ++ GPT+EVVAP++ ALA+AG +YTVEFDYDNGFG Q GRFKIDLY A +G GDCG WV+SVCDKPDVGC D+ Sbjct: 3 SSVAFIAALTGMLGNI-ITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDA-CMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHA---EGTGDCGDWVSSVCDKPDVGCHDTE 214
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 192 bits (489), Expect = 6.120e-58 Identity = 97/197 (49.24%), Postives = 130/197 (65.99%), Query Frame = 1 Query: 76 ALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGS-DAYRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDS 663 AL+V+TPA + VVS R Y V W+G ++ RFEIDL+YC S C E+ ECG W+ +C G+ GC + + PEP+ S GY++R+A+V D+ CSD+FYLM+ ADAP+A + GGP + V +P+ A AGE YTVEFDYDNG G +GRF IDLY A G+GDCGT++ ++CDKP +GC DS Sbjct: 20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSM--CMED-ECGEWVTALCPYGE-DGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAAT---GSGDCGTFMYTLCDKPTIGCKDS 208
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 193 bits (490), Expect = 7.160e-58 Identity = 96/197 (48.73%), Postives = 133/197 (67.51%), Query Frame = 1 Query: 76 ALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSD-AYRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDS 663 AL+V+TPA + VV+ R Y V W G +++R+EIDL+YCGS C E+ ECG W+ +C G+ GC + + PEP+ S GY++R+A+V D + CSD+FYLM+ A+AP+AG+ GGP + V +P++ A AGE YTVEFDYDNG G +GRF IDLY A G+GDCGT++ ++CDKP +GC DS Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSM--CMED-ECGDWVTALCPYGE-DGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAT---GSGDCGTFMYTLCDKPTIGCKDS 195
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 188 bits (477), Expect = 2.520e-56 Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 1 Query: 28 VALA-GILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDAYR-CSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDSR 666 VALA G+LG + AL+V TP+ TV++ R Y V W G S+D+RFEIDL+YCGS C E+ +CG W+ +C G+ GC + + PEP+ S GY++R+ ++ + CSD+FYL++S++AP+ G+E GPT+EV +P + LA YTVEFDYDNG G ++ RF IDLY A DG GDCGT+V S+CDKP +GC DS Sbjct: 8 VALACGMLG-----AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMED-DCGDWVTALCPYGE-DGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRA---DGDGDCGTYVQSICDKPTIGCKDSN 209
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 186 bits (473), Expect = 2.070e-55 Identity = 101/214 (47.20%), Postives = 138/214 (64.49%), Query Frame = 1 Query: 28 VALA-GILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDAYR-CSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDS 663 VALA G+LG + AL+V TP+ TV++ R Y V W G S+D+RFEIDL+YCGS C E+ +CG W+ +C G+ GC + + PEP+ S GY++R+ ++ + CSD+FYL++S++AP+ G+E GPT+EV +P + LA YTVEFDYDNG G + RF IDLY A DG GDCGT+V S+CDKP +GC DS Sbjct: 7 VALACGMLG-----AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMED-DCGDWVTALCPYGE-DGCPDNEGDYD-IVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRA---DGEGDCGTYVQSICDKPTIGCKDS 207
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 185 bits (470), Expect = 4.240e-55 Identity = 99/197 (50.25%), Postives = 127/197 (64.47%), Query Frame = 1 Query: 76 ALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGS-DAYRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDS 663 AL+V+TP+ VV+ R Y V W GA + RFEIDL++CGS C E++ CG W+ +C G+ GC + + PEP+ SN GY++R+ +V D+ CSD FYLM+S DAP AG E G + V +P A AGE YTVEFDYDNG G ++ RF IDLYMA DG GDCGT+VTS+CDKP +GC DS Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSM--CMEDS-CGDWVTALCPYGE-EGCPDNEGDYD-IVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMA---DGDGDCGTYVTSICDKPSIGCKDS 206
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 159 bits (403), Expect = 4.570e-45 Identity = 86/198 (43.43%), Postives = 126/198 (63.64%), Query Frame = 1 Query: 76 ALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDA-YRCSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDSR 666 AL+V++PA + VV+ Y V W GA++ R++IDL+YCGS C E+ ECG W+ +C GD +Q D V PEP+ + ++ GY++ + + ++ Y CS DF L++S +AP A + G + V +P+ A+AG YTVEFDYDNG G + RF IDLY + G+GDCGT+VT++CDKP +GC DS+ Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSV--CMED-ECGDWVTALCPYGDDGCPDTQGDYD--VVMPEPM-DGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSS---GGSGDCGTYVTTICDKPSIGCKDSQ 205
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 159 bits (402), Expect = 6.830e-45 Identity = 90/199 (45.23%), Postives = 126/199 (63.32%), Query Frame = 1 Query: 76 ALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCM-SQDDQSSQVTFPEPLGERSNEGYRIRIAEVGSDAYR-CSDDFYLMSSADAPAAGEEGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYMALAEDGAGDCGTWVTSVCDKPDVGCLDSR 666 AL+V++PA +V++ R Y V W G S D RFEIDL+YCGS+ C E+ ECG W+ +C G GC +Q D + PEP+ S+ GY++ + + ++ CS DF L++S DAPAAGE G ++ V +P+ A+AG +YTVE+DY+NG G RF IDLY G GDCGT+V ++CDKP +GC DS+ Sbjct: 19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSF--CMED-ECGDWVTALCPYG-ADGCPDTQGDYD--IVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGT--GTGDCGTYVATLCDKPSIGCPDSQ 206 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10116.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10116.147.1 >prot_Ecto-sp13_S_contig10116.147.1 ID=prot_Ecto-sp13_S_contig10116.147.1|Name=mRNA_Ecto-sp13_S_contig10116.147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp MKSSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGback to top mRNA from alignment at Ecto-sp13_S_contig10116:51..2307- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10116.147.1 ID=mRNA_Ecto-sp13_S_contig10116.147.1|Name=mRNA_Ecto-sp13_S_contig10116.147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10116:51..2307- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10116:51..2307- >mRNA_Ecto-sp13_S_contig10116.147.1 ID=mRNA_Ecto-sp13_S_contig10116.147.1|Name=mRNA_Ecto-sp13_S_contig10116.147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10116:51..2307- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |