Homology
BLAST of mRNA_Ecto-sp13_S_contig101146.146.1 vs. uniprot
Match:
D7G0L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L4_ECTSI)
HSP 1 Score: 144 bits (363), Expect = 6.470e-40
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1
Query: 1 MQKQVHTCLVPSERDFLLACLDEMHCRCDSLLHGKKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAMRTLIPL 222
+ +QVHTCLVPSERDFLLACLDEMHCRCDSLLHG+KQVAAFHEQGAVEALLEMLGMFKLDEVFLRQA+RTLIPL
Sbjct: 25 LMEQVHTCLVPSERDFLLACLDEMHCRCDSLLHGRKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPL 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101146.146.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.47e-40 / Id = 93.24 Sequence D7G0L4_ECTSI
Match Name E-value Identity Description
D7G0L4_ECTSI 6.470e-40 93.24 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 222 Hectar predicted targeting category other localisation Exons 2 Cds size 222
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462508.7134252-CDS-Ecto-sp13_S_contig101146:38..157 1681462508.7134252-CDS-Ecto-sp13_S_contig101146:38..157 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig101146 39..157 - 1681462508.7629957-CDS-Ecto-sp13_S_contig101146:394..497 1681462508.7629957-CDS-Ecto-sp13_S_contig101146:394..497 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig101146 395..497 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101146.146.1
>prot_Ecto-sp13_S_contig101146.146.1 ID=prot_Ecto-sp13_S_contig101146.146.1|Name=mRNA_Ecto-sp13_S_contig101146.146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MQKQVHTCLVPSERDFLLACLDEMHCRCDSLLHGKKQVAAFHEQGAVEAL back to top mRNA from alignment at Ecto-sp13_S_contig101146:39..497-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101146.146.1 ID=mRNA_Ecto-sp13_S_contig101146.146.1|Name=mRNA_Ecto-sp13_S_contig101146.146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101146:39..497- (Ectocarpus species13 EcNAP12_S_4_19m)ATGCAAAAACAGGTTCATACGTGCCTGGTGCCTTCGGAGAGAGACTTCTT
GCTTGCCTGCCTAGACGAGATGCACTGCCGGTGCGACTCTCTTCTGCACG
GAA GTGAGTGTGCGTAACACAACCAAACTCTACAAGCAAACGCCACATGT
TTCGAGGATTGACTGGGGCGTTGAGATAGTAGGCGAATTGAGAGCGAGAG
TTCTACATATATTGATCAGACTCAGTCTTTGTTTTTCCGTCCCATTTCAT
CTGGGCGCCTGTCGCTTTAGGTTTTCGTACAATTTCTGGACGATGCAAAG
ATAATAAACCAGCTGAACAGACGTGCCTTGTTCCGAGCAGAAAAGCAGGT
AGCAGCCTTTCACGAGCAGGGCGCGGTGGAAGCCTTGTTGGAGATGTTGG
GCATGTTTAAACTGGACGAGGTTTTCCTCCGACAAGCCATGAGGACTCTC
ATCCCCCTT back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101146:39..497-
>mRNA_Ecto-sp13_S_contig101146.146.1 ID=mRNA_Ecto-sp13_S_contig101146.146.1|Name=mRNA_Ecto-sp13_S_contig101146.146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101146:39..497- (Ectocarpus species13 EcNAP12_S_4_19m) back to top