mRNA_Ecto-sp13_S_contig10114.145.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10114.145.1
Unique Name	mRNA_Ecto-sp13_S_contig10114.145.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A6H5JAU5_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU5_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 3.990e-121
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQLS 547
            GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHGYQ+VANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQLS
Sbjct:  309 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHGYQMVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQLS 490

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: D8LK23_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK23_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 3.080e-116
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQLS 547
            GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVY+ANAYHQAPHHYLRVVGSMYHL+PMKTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQLS
Sbjct:  684 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYVANAYHQAPHHYLRVVGSMYHLSPMKTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQLS 865

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: F0YJN8_AURAN (Thioredoxin domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN8_AURAN)

HSP 1 Score: 187 bits (476), Expect = 9.050e-52
Identity = 93/184 (50.54%), Postives = 132/184 (71.74%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWH---GYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQL 544
            GCMV+GH++VNRVPGNFHIEA S  H  + A TNLSH+V+H+SFG    +  Q K+++  +  +   PLDG ++++  YHQ  HHY +VV + + +  M T      GYQ++A SQ+M Y+E +VPEA+FSY++SPM+VLV S+ R WYDFVT V AI+GGTF++VG+VDA +++   K G+QL
Sbjct:  143 GCMVSGHVLVNRVPGNFHIEARSIHHNLNAAMTNLSHVVNHLSFGTPLAKDMQRKVSKYPQ-FQSVHPLDGGIFVSRDYHQVHHHYSKVVSTHFEVGGMMTKSREIVGYQMLAQSQIMHYNEMDVPEAKFSYDLSPMAVLVSSKGRRWYDFVTSVCAIIGGTFTVVGIVDAVLYKII-KGGKQL 324

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A7S2B692_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B692_9STRA)

HSP 1 Score: 186 bits (471), Expect = 7.610e-50
Identity = 90/181 (49.72%), Postives = 129/181 (71.27%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPM---KTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAG 535
            GCM++GH++VNRVPGNFH+EA SKSH  + A TNLSHIV+H+SFG  P  + Q +  +   +    APLDGNVY+   YHQA HH+ +VV + Y ++ M   K    GYQ++  +Q+M Y E++VPEA+FSY++SPM+V+V S+ R WYDF+T + AI+GGTF++VGL+D  + +  +  G
Sbjct:  255 GCMISGHLLVNRVPGNFHLEARSKSHNLNAAMTNLSHIVNHLSFG-QPLNQIQKRKMKKFPEYTSTAPLDGNVYVNKDYHQAHHHFSKVVSTHYEVDGMLSRKNRIMGYQMITQNQIMHYKEDDVPEAKFSYDLSPMAVVVTSKGRRWYDFLTSLCAIIGGTFTVVGLLDTFLHKFLKDKG 434

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A7S3JS36_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS36_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.140e-49
Identity = 91/184 (49.46%), Postives = 128/184 (69.57%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWH---GYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGRQL 544
            GCMV+GH++VNRVPGNFHIEA SK H  +   TNLSH+V+H+SFG    +    K++      ++N PLD  ++I   +HQA HHY +VV + + +  M +      GYQ+++ SQ+M YD E VPEA+FSY++SPM+V+V S+ R WYDFVT V AI+GGTF+ VG++DA + +   KAG+QL
Sbjct:  287 GCMVSGHVLVNRVPGNFHIEARSKLHNLNPTMTNLSHVVNHLSFGTPLSKDLARKVSHYFPQFQENHPLDNGIFINKQFHQAHHHYSKVVSTHFEVGGMMSKTREVVGYQMLSQSQIMQYDIEAVPEAKFSYDLSPMAVIVSSKGRRWYDFVTSVCAIIGGTFTTVGIIDAILHKVL-KAGKQL 469

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A7S0AES5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AES5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.340e-49
Identity = 89/182 (48.90%), Postives = 127/182 (69.78%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDP---PRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASRKAGR 538
            GC V+GH+ VNRVPGNFH+EA SK+H  + A TNL+H V+H+SFG       R  +  +  L E+ +Q +P+DG +Y  + YHQA HHY++VV +  HL+        YQ +  SQ++ YDE  VPEARFSY++SPMSV+V+ E R WYD++T + AI+GGTF+ +GL+DA +++A  KAG+
Sbjct:   33 GCQVSGHLYVNRVPGNFHLEAKSKNHNLNAAMTNLTHRVNHLSFGAPDFTASRNMKRILKTLPEEHQQFSPMDGTMYHTSKYHQAYHHYIKVVST--HLDMAGNTETAYQFLEQSQIVYYDEVNVPEARFSYDLSPMSVVVKREGRKWYDYLTSLCAIIGGTFTTLGLIDAVLYKAF-KAGK 211

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: B7G7A0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7A0_PHATC)

HSP 1 Score: 184 bits (466), Expect = 7.980e-49
Identity = 88/178 (49.44%), Postives = 130/178 (73.03%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFG---NDPPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHG---YQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFR 517
            GC V+GH+MVNRVPGNFH+EA SKSH  + A TNLSH+V+H+SFG   ++  R+++  + ++ E+ RQ AP+DG  ++  A+HQA HHY++VV +  HLN   +  +    YQ +  SQ++ YD+  VPEARFSY++SPMSV+V  E R WYD++T + AI+GGTF+ +GL+DA +++
Sbjct:  285 GCQVSGHLMVNRVPGNFHLEAKSKSHNLNAAMTNLSHVVNHLSFGEPIDENNRKSKRILKQVPEEHRQFAPMDGQAFLTKAFHQAFHHYIKVVST--HLNMGSSDANSMLTYQFLEQSQIVFYDDVNVPEARFSYDLSPMSVVVEKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYK 460

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A7S1VFQ8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VFQ8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.060e-47
Identity = 88/178 (49.44%), Postives = 125/178 (70.22%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGND---PPRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHG---YQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFR 517
            GC V+G +MVNRVPGNFHIEA SK+H  + A TNL+H V+H+SFG       R+T+  + ++ ED +Q AP+D  +Y    +HQA HHY++VV +  HLN   T  +    YQ +  SQ++ YDE  VPEARFSY++SPMSV+V+ E R WYD++T + AI+GGTF+ +GL+DA +++
Sbjct:   57 GCQVSGFLMVNRVPGNFHIEAKSKNHNLNAAMTNLTHTVNHLSFGEPIVKTNRKTKRILKQVPEDHQQFAPMDDMLYHTADFHQAYHHYIKVVST--HLNMGTTDANAMIAYQFLEQSQIVYYDETNVPEARFSYDLSPMSVVVQKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYK 232

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A7S1D7M2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7M2_CYCTE)

HSP 1 Score: 178 bits (452), Expect = 1.150e-47
Identity = 87/179 (48.60%), Postives = 131/179 (73.18%), Query Frame = 2

Query:    2 GCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDP----PRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTPWHG---YQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFR 517
            GC V+G +MVNRVPGNFHIEA SK+H  + A TNL+H V+H+SFG DP     R+T+  + ++ E+ +Q +P+DG +Y+ + +HQA HHY++VV +  HLN   +  +    YQ +  SQ++ YD++ VPEARFSY++SPMSV+V+ E R WYD++T + AI+GGTF+ +GL+DA +++
Sbjct:  197 GCQVSGFLMVNRVPGNFHIEAKSKNHNLNAAMTNLTHTVNHLSFG-DPIEGTSRKTKRILKQVPEEHQQFSPMDGTMYLTSQFHQAYHHYIKVVST--HLNMGASAANSMVTYQFLEQSQIVYYDDQNVPEARFSYDLSPMSVVVQKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYK 372

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BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Match: A0A448Z7R2_9STRA (Thioredoxin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7R2_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.100e-47
Identity = 90/178 (50.56%), Postives = 126/178 (70.79%), Query Frame = 2

Query:    5 CMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDP----PRRTQTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLN---PMKTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFR 517
            C V+GH+MVNRVPGNFHIEA SK+H  + A TNL+HIV+H+SFG DP     RR +  + ++ ED RQ  P+D ++Y+   +HQA HHY++VV +  HLN    +      YQ +  SQ++ YDE  VPEARFSY++SPMSV+V  E R WYD++T + AI+GGTF+ +GL+DA +++
Sbjct:  301 CQVSGHLMVNRVPGNFHIEAKSKNHNLNSAMTNLTHIVNHLSFG-DPIDQKSRRAKRILKQVPEDHRQFNPMDDSLYVTKEFHQAYHHYIKVVST--HLNMGTALANQMLTYQFLEQSQIVYYDETNVPEARFSYDLSPMSVVVEKEGRKWYDYLTSLCAIIGGTFTTLGLIDAVLYK 475

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10114.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5JAU5_9PHAE	3.990e-121	99.45	Thioredoxin domain-containing protein n=1 Tax=Ecto...	[more]
D8LK23_ECTSI	3.080e-116	98.90	DEAD box helicase n=1 Tax=Ectocarpus siliculosus T...	[more]
F0YJN8_AURAN	9.050e-52	50.54	Thioredoxin domain-containing protein n=1 Tax=Aure...	[more]
A0A7S2B692_9STRA	7.610e-50	49.72	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S3JS36_9STRA	1.140e-49	49.46	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A7S0AES5_9STRA	2.340e-49	48.90	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
B7G7A0_PHATC	7.980e-49	49.44	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7S1VFQ8_9STRA	1.060e-47	49.44	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A7S1D7M2_CYCTE	1.150e-47	48.60	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A448Z7R2_9STRA	2.100e-47	50.56	Thioredoxin domain-containing protein n=1 Tax=Pseu...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	365.9
Seed ortholog evalue	1.1e-98
Seed eggNOG ortholog	2880.D8LK23
Preferred name	DDX39A
Model size	1486
KEGG ko	ko:K12812,ko:K13182,ko:K20365,ko:K20367
KEGG Pathway	ko03013,ko03015,ko03040,ko05164,map03013,map03015,map03040,map05164
KEGG Module	M00406,M00430
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007275,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009555,GO:0009791,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010501,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0030054,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0042221,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046686,GO:0046907,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0099402,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons	6
EggNOG free text desc.	mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGs	COG0445@1,COG0513@1,KOG0329@2759,KOG2667@2759
EC	3.6.4.13
Cds size	543
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019,ko03041,ko04131

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10114.145.1	prot_Ecto-sp13_S_contig10114.145.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10114 9..3503 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462508.606142-UTR-Ecto-sp13_S_contig10114:1..8	1681462508.606142-UTR-Ecto-sp13_S_contig10114:1..8	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10114 2..8 +
1681462508.6853466-UTR-Ecto-sp13_S_contig10114:3503..4439	1681462508.6853466-UTR-Ecto-sp13_S_contig10114:3503..4439	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10114 3504..4439 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462508.6185799-CDS-Ecto-sp13_S_contig10114:8..92	1681462508.6185799-CDS-Ecto-sp13_S_contig10114:8..92	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10114 9..92 +
1681462508.6297884-CDS-Ecto-sp13_S_contig10114:511..586	1681462508.6297884-CDS-Ecto-sp13_S_contig10114:511..586	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10114 512..586 +
1681462508.6418242-CDS-Ecto-sp13_S_contig10114:1044..1143	1681462508.6418242-CDS-Ecto-sp13_S_contig10114:1044..1143	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10114 1045..1143 +
1681462508.6537256-CDS-Ecto-sp13_S_contig10114:1834..1909	1681462508.6537256-CDS-Ecto-sp13_S_contig10114:1834..1909	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10114 1835..1909 +
1681462508.6651793-CDS-Ecto-sp13_S_contig10114:2650..2797	1681462508.6651793-CDS-Ecto-sp13_S_contig10114:2650..2797	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10114 2651..2797 +
1681462508.672752-CDS-Ecto-sp13_S_contig10114:3440..3503	1681462508.672752-CDS-Ecto-sp13_S_contig10114:3440..3503	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10114 3441..3503 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10114:2..4439+
coding sequence from alignment at Ecto-sp13_S_contig10114:2..4439+

protein sequence of mRNA_Ecto-sp13_S_contig10114.145.1

>prot_Ecto-sp13_S_contig10114.145.1 ID=prot_Ecto-sp13_S_contig10114.145.1|Name=mRNA_Ecto-sp13_S_contig10114.145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRT
QTKINRLTEDLRQNAPLDGNVYIANAYHQAPHHYLRVVGSMYHLNPMKTP
WHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKV
LAIVGGTFSMVGLVDAAVFRASRKAGRQLS*

mRNA from alignment at Ecto-sp13_S_contig10114:2..4439+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10114.145.1 ID=mRNA_Ecto-sp13_S_contig10114.145.1|Name=mRNA_Ecto-sp13_S_contig10114.145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10114:2..4439+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTGCATGGTGACGGGACACATCATGGTCAACCGCGTTCCGGGAAACT
TCCACATCGAGGCCGCCTCCAAGAGCCACACCTTCCATGGGGTGAGAGGG
ACAATGAGAGAGAGGGAGACAATGAGGAAGAGATAGACGATGAGAAGGAG
GGAGACGATGGGAGAGAGAGATGGAGAGATGGAGATGCAGAGCAATGAGA
GAAGGAGGGAAAGACGAGGAAGAAATAGAGAGGGGGAGGGGGGGGAAGGG
GGGTAGTGAGAGACAGACAGAGAGGGAGAGACAGACAGAGAAACAGAGAA
AGACAGAGACAGACAAGAGAGACAGAGAAATCGTATTCGTCTTCATCGGT
CGTGCGCGTGGAAATGCTCACAACCCCCCCCCCCCCCGTGTTCCACCGTC
ATCGTCGCCACCGCTCTGCCGTTTTTGTGCCGGTTCGTGGGCGGGTTCGG
TTGCGTGCTGCTGGTTCTTCCGCGATCCCACCCATGTCTTCGGACGATGA
TGGCGATTAGGCAACGACCAACCTATCGCACATCGTGCACCACATGTCGT
TCGGGAACGACCCGCCTAGAAGGACACAGACCAAGGTACATATGATTGTG
GTTTTGACACAGGTTTTGCACGCGACGCCATGCGCCCATGAACAAAACTC
ACTTTGGTTGCTTTTGGTCTCGCTGCGACCGTCGAACCAGAGCTGTGAAT
ATTGGTACTGATCACTATTGCATCGTTTCGTGGTTTTTGGTTGACCCGGT
GCTGTATGGGCGGCCTGGGGATGCGGCCTGGAGTTGCTGGGTGTGACAAA
CAGGCCGTATGCTTGTCACCCGCTGCCGTGCTGCTCCGACATCCTCTCGC
CTTTGGTCTGGTGTGAAGCTTTATTTAGTTTCGTTTTTTCTTGCTGTCGC
TTTTGCATTGTTTGTTCTTCCGCGCAGAGTTACTTTGTCTGGCTGATTTG
TACACCCCCTGTCGCGTTTCGTTCTTACTAGGATACGCCGCTTCTTTCTT
CGTGGGGTTCTTTTTTATTGTTCCCCTTTTATCTGTCATTTAGATCAACC
GTCTCACCGAGGATCTTCGCCAGAATGCCCCTCTCGACGGCAACGTCTAC
ATCGCCAACGCGTACCACCAGGCCCCCCACCACTACCTCAGGGTGAGAGA
GAGAGGCTTTTCGGGCTATTTGTTTTCTGTTCGGGGTGTTCAGGCTTTTC
GGGCGAATTACTTGCTATTCGGGGTGTTCGCTCCTGAGTTTAATACAAAA
AGGGGAGGGGGGGGAGTTCTTTCATGTGGAGTTTCTTGATTCTCGCACCG
ACAAACTCGGATAAGCGAGACTCCTCCACACGTCCGGATGATGGTTTGGA
GAGTTCTGATGCTGGACAGTTGGAGAACCAGTGAAACAGAAATCCACGCC
GCGCGGCAAGAAATGAAGACTGTTGTTTTTTGTCGTAGAATGTCTTTTTT
CCTTGGCAACGAACGAGGTCTCCATTTCGTGATTTGCGTGGTTCTCCTGT
AGTCAAAAGTTTTCGAAGTTTTCAGGCGCAAAAATGTTGGAAACGACGTA
GGAGTTTGTCCATGCACATTGGAGTTCTGTTGGGATGCCTGATGATGATG
GAATATGCCCCGGGTTCAACGCCCGCCACCCACCTTTTTGTTCGTCGATC
CCGATGATTCTTGTTTGTTTTGCGTCATGCTGCAGGCCCCCGTAATGAGT
GGTGCCCAATGCTTCAGCCTGAATGAGCGAAGGGTGGTACTCCACCCTCT
GGAGAATTTTCTTAGATGTTTCTCCTGGGTTCGTGCTGTGACAAGAACGA
TTGGTGGCGTGCCGTTGTGACGTTTTTGTTCAGGTGGTCGGGTCGATGTA
CCACCTTAATCCGATGAAGACCCCATGGCATGGCTACCAGATCGTCGCCA
ACAGCCAGGTCAGTCAGTCCGGTTGCATTCCAAACGCAGCAAACCGTACG
AGGTGTTCTCGCAACGCGTGGATAAGCAAGAGTTTTAGGAACAGAAACCA
AACCGTTGTAGCAGTCAGTGCTGACGGGTCTCGCAGTTTTGGCCTCGTTT
GGTCAAAAAGCCTCACATGTTGTGCATGGGCTAGTCCGATGATATTGCAG
TTTGAATGACCGTGCGTCTCTCTCGCTCTTCAAGTACAGCGAATACCATC
GACTGCGCTTTAGTCTAACTGGCTCACCAATGAAAGCACGCCAGTATCAG
CGTGTAAATGCCAATCAAGGGTCCCCGGAGCGGGGGGGCAAAAATCGAAG
AATTGTTGTCGTCCAGAGTGCCGTATTTCCCTCTCTACACACCCTTGGGG
GCGTTTTCAGATTATGCTGTTCGACGAAGAACAAGGAGTAAGAGGTGCCC
GAGGCTACACGCCAAAATTCGCCCAGAACATGTCATGTCATAGTAGCACC
TCTCTACCAAACCCTTGTGTGTGTGTGGGTGTGTGTTTACAGATTATGCT
GTTCGGCACAACAGAGGTGCCGACATTGCTCTCCGTATTCTCTCCACCGG
CCATTCCGCTTGTTTGCATATGATGCAGAACGACCAAGGAGACGAGATGC
CCGAGGGCACGCGCCGCCCAGAATGCCATGGATAAAGCTCTCTACAAATC
CTGACCCTTGTGTGTGTGCCGGCGTGCGTTTCGTGTTTTTCCATGTCAGA
TGATGCTGTACGACGAAGAAGAGGTGCCCGAGGCGAGGTTCTCTTACAAC
ATCTCACCCATGTCGGTGCTGGTGAGAAGCGAGAAGCGCCCGTGGTACGA
CTTCGTCACCAAGGTGCTGGCCATCGTGGGTGGTACCTTCAGCATGGTGA
GTTCCCCGCACACACACTGGGCCAAGATATGGCTGTGTGTTAGTTATAGC
GTTGCTGCTTGCAAACGTTTGAATGGCCGTAGAGAAGGACGCAGGACGTC
GTTGGCAGGTATTAAAGCACCCCGTGTTGTGGGAATACGTATGCGTATGT
ATCCGTTATGCGTACCACCTTGTAGTCCCCGCTTATTTTCGTTGATTGCG
TGTTGTTTGCCCACGGTTCTGGTGCGGGTGGTTTTGTTGTGGGAAACTAC
GCGTTTTGAGCGCAGTTGTTGTCGTTCACAGCATTTCGTGTTGGCGGAGT
AGTCCAACCTCCTCAATTCTTCACGGCTTCCCAGAATATCGCGTTTGGTG
CTGCTGATGTTGGAAATCCTCGTCGACGTGGAGTGATGGAGGCGTCAAGC
ATCGGTCCAGGGGTTGTTGGGCATCTCATGCGAACCTTGTCTCGAAAATA
ATCCGGGTGCGCGTGTAGAAATTGTTGTGCGTTTGGTTTGGACTATAATC
TAGTCTCTTCCTTCCCCACTCGGCCACAGTTCAATTTTTGTCACTTCTGA
CTCTGCCACGGACATTGTTGTATGTGCGGTGCAATCGACTTATCGGTTAC
GTGCGTCAATATCATATGCTCCTTCCTTTTTGCGGCCAGGTCGGGCTCGT
CGACGCAGCCGTGTTCAGGGCATCGCGAAAAGCGGGCCGGCAGCTCTCGT
GAGGTCATCCACCACTCGTATGACGTCAATAGGTCTCGTGACGTCATGAG
CGTTTGTGTGACGTCATCAGCACCGGCAGGCACCTCAACTACCCATTCCC
TTCCTTCGCTCTCCTTCTGCAGGGCTATCTAGCAGCAGCGAAACACCAGC
AGTGTGACATTGTTTTTTTTAGGAGGAAACTAGTCGAGTCTTTTTTGGGG
AGGGGACAGGGGCTTGCTGTTGCATGTGGGCCGGCAGGCAGGCACACAGG
GTGGCTGAATACACGCTGCCTGAAAAAAGCAACCGGACGGTGCTGACGTC
ACTCACGGTAGGACGCGGAATAGGGCCTTGTTACAGTTGGGAGGGAGTTT
CGGCGGCAGTGTCTAGCACCCGCCGACTGCGATATCTCGGCGGGCTGCTG
CTGGTGTTCCCTGGCCTTTTCAGCGTGGTGGCAATGGGCTCGGGGGGGAT
TGATGTTCAAGGTTTTTGTCCTGTTATCCGCGTTCCAGCGTGACCAGCTA
TCTACAGTTCAGTACTCCGTGTGTTGAAGCTGGGCATACGGTTCGGGTGG
TTGGTGGTGTTGATGCCTTCCTTCGTCACTAACGGCGGTTGGTTGTCGGC
TATTTTTCGTGTGGCCTGGCTTTTGTGTGTATTTATCGCCGGGGGTGCAT
CTGTGCTGATGATTTTGCTGCTGAACTGATACCCAAATCGTTTTGCTCGC
CGGGGAAACACGTGATTGATAGACACATGATCAATCATCAGTCCTACACC
CGATTCGGCGGACGATGCCACAAGGGTTGGGTGCCTGAAGCCACTGCTGG
TTGTTGTTGCTGTTTGTGCTCTGTGGTATCCTTGCTAAAAACCTTCGTGT
GTTGAGTTAAATGTACCGGCGCCCACAACAAGACTCCATCCCCCGTCCAT
CGTCCTCAACAACGACAGAATCAGCATTTTCATCGACC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10114:2..4439+

>mRNA_Ecto-sp13_S_contig10114.145.1 ID=mRNA_Ecto-sp13_S_contig10114.145.1|Name=mRNA_Ecto-sp13_S_contig10114.145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10114:2..4439+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACGGGACACATCATGGTCAACCGCGTTCCGGGAAACTTCCACAT
CGAGGCCGCCTCCAAGAGCCACACCTTCCATGGGGCAACGACCAACCTAT
CGCACATCGTGCACCACATGTCGTTCGGGAACGACCCGCCTAGAAGGACA
CAGACCAAGATCAACCGTCTCACCGAGGATCTTCGCCAGAATGCCCCTCT
CGACGGCAACGTCTACATCGCCAACGCGTACCACCAGGCCCCCCACCACT
ACCTCAGGGTGGTCGGGTCGATGTACCACCTTAATCCGATGAAGACCCCA
TGGCATGGCTACCAGATCGTCGCCAACAGCCAGATGATGCTGTACGACGA
AGAAGAGGTGCCCGAGGCGAGGTTCTCTTACAACATCTCACCCATGTCGG
TGCTGGTGAGAAGCGAGAAGCGCCCGTGGTACGACTTCGTCACCAAGGTG
CTGGCCATCGTGGGTGGTACCTTCAGCATGGTCGGGCTCGTCGACGCAGC
CGTGTTCAGGGCATCGCGAAAAGCGGGCCGGCAGCTCTCGTGA