mRNA_Ecto-sp13_S_contig101135.144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A6H5JKX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX4_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.840e-19 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV Sbjct: 446 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 493
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A835YJQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ5_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.590e-14 Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144 GL+ALG+SG VLSFIVF+CSFVPV GVF+STLPM VAALG+YG+SKV Sbjct: 365 GLLALGISGAWVLSFIVFICSFVPVAGVFLSTLPMVVAALGEYGVSKV 412
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A353GI09_9BACT (Uncharacterized protein n=1 Tax=Candidatus Sumerlaeota bacterium TaxID=2107588 RepID=A0A353GI09_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 2.170e-7 Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144 GLI LGV VLS IVFLCSF+PV+GVFIST P+ + AL +G+S V Sbjct: 289 GLIVLGVPSLAVLSLIVFLCSFIPVLGVFISTTPIVLVALNAHGLSCV 336
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A7S2DSY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSY6_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.560e-7 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSK 141 GLI L + VLS IVF+CSF+P IG+ +STLPM V AL +YGM K Sbjct: 295 GLIFLKIPAVGVLSLIVFICSFIPAIGILLSTLPMLVIALNEYGMQK 341
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: M2VTE1_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTE1_GALSU) HSP 1 Score: 53.5 bits (127), Expect = 5.570e-7 Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSK 141 GL+ L + G LSFIV +CSF+PV+GVFIST PM V A+ +YG+ K Sbjct: 376 GLMFLRIPGIGFLSFIVLICSFIPVVGVFISTFPMIVVAISEYGIQK 422
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A6V1PBQ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PBQ1_HETAK) HSP 1 Score: 51.2 bits (121), Expect = 3.460e-6 Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144 GL+ L + G +++S +VF+CSF+P+ G+ IST PM AL +YG+ KV Sbjct: 174 GLLVLRIPGAVLMSILVFVCSFIPLAGIIISTFPMCAVALTEYGLGKV 221
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A7S3XQP3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQP3_HETAK) HSP 1 Score: 51.2 bits (121), Expect = 3.650e-6 Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKV 144 GL+ L + G +++S +VF+CSF+P+ G+ IST PM AL +YG+ KV Sbjct: 422 GLLVLRIPGAVLMSILVFVCSFIPLAGIIISTFPMCAVALTEYGLGKV 469
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: F9ZFK9_9PROT (Uncharacterized protein n=5 Tax=Nitrosomonas TaxID=914 RepID=F9ZFK9_9PROT) HSP 1 Score: 50.1 bits (118), Expect = 9.330e-6 Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMS 138 GL+ LG+ +LS IVF+CSF+PV+GVFIST PM + AL G++ Sbjct: 282 GLVILGIPSVALLSLIVFVCSFIPVLGVFISTTPMVLVALNTGGLT 327
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A1H2W3W4_9PROT (Uncharacterized protein n=6 Tax=Nitrosomonas TaxID=914 RepID=A0A1H2W3W4_9PROT) HSP 1 Score: 50.1 bits (118), Expect = 9.330e-6 Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMS 138 GLI LG+ +LS IVF+CSF+PV+GVFIST PM + AL G++ Sbjct: 285 GLIILGIPSVALLSLIVFVCSFIPVLGVFISTTPMVLIALNTGGLT 330
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Match: A0A2V3IVJ3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVJ3_9FLOR) HSP 1 Score: 50.1 bits (118), Expect = 9.340e-6 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1 Query: 1 GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSK 141 GL+ L + G LS + +CSF+PV GVF+STLPM + AL +YG +K Sbjct: 330 GLLVLSIPGIGFLSVVTLVCSFIPVAGVFVSTLPMCIIALSEYGAAK 376 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101135.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101135.144.1 >prot_Ecto-sp13_S_contig101135.144.1 ID=prot_Ecto-sp13_S_contig101135.144.1|Name=mRNA_Ecto-sp13_S_contig101135.144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp GLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKVback to top mRNA from alignment at Ecto-sp13_S_contig101135:355..498- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig101135.144.1 ID=mRNA_Ecto-sp13_S_contig101135.144.1|Name=mRNA_Ecto-sp13_S_contig101135.144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101135:355..498- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101135:355..498- >mRNA_Ecto-sp13_S_contig101135.144.1 ID=mRNA_Ecto-sp13_S_contig101135.144.1|Name=mRNA_Ecto-sp13_S_contig101135.144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101135:355..498- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |