mRNA_Ecto-sp13_S_contig101133.143.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig101133.143.1 vs. uniprot
Match: UPI0014223FCA (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014223FCA) HSP 1 Score: 257 bits (656), Expect = 1.450e-78 Identity = 142/160 (88.75%), Postives = 150/160 (93.75%), Query Frame = 1 Query: 1 LAARGAGSGQQVDLGRAAMTGTFGMGFEGALMAFQRIPGLRAVFGNPALYRQGSGLTDRGRAILRESGINPDEFSPAMAEQFAAAARQTDDVAAAARQAEAQTLPSPVTLSGAQASRNPTAMALESEAKKGVLGPENQSLLLDTQAQQQAALRGNIPAIQ 480
LAARGAGSGQQVDLGRAAMTG GMGFEGALMA QRIPGLRAVFG+PALYRQGSGLTDRGR ILR+SGINPDE SPAMA+Q +A ARQTDDVAAAARQAEAQTLP+PV+L+GAQA+RNPTAMALE EAKKGVLG E QSLLLDTQAQQQAALRGNIPAIQ
Sbjct: 219 LAARGAGSGQQVDLGRAAMTGATGMGFEGALMALQRIPGLRAVFGSPALYRQGSGLTDRGRNILRDSGINPDEISPAMADQLSAIARQTDDVAAAARQAEAQTLPNPVSLTGAQAARNPTAMALEGEAKKGVLGQEAQSLLLDTQAQQQAALRGNIPAIQ 378 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101133.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig101133.143.1 >prot_Ecto-sp13_S_contig101133.143.1 ID=prot_Ecto-sp13_S_contig101133.143.1|Name=mRNA_Ecto-sp13_S_contig101133.143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp LAARGAGSGQQVDLGRAAMTGTFGMGFEGALMAFQRIPGLRAVFGNPALYback to top mRNA from alignment at Ecto-sp13_S_contig101133:26..505+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig101133.143.1 ID=mRNA_Ecto-sp13_S_contig101133.143.1|Name=mRNA_Ecto-sp13_S_contig101133.143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101133:26..505+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101133:26..505+ >mRNA_Ecto-sp13_S_contig101133.143.1 ID=mRNA_Ecto-sp13_S_contig101133.143.1|Name=mRNA_Ecto-sp13_S_contig101133.143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101133:26..505+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |