mRNA_Ecto-sp13_S_contig10113.142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A6H5JHM9_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM9_9PHAE) HSP 1 Score: 484 bits (1247), Expect = 4.120e-170 Identity = 245/261 (93.87%), Postives = 248/261 (95.02%), Query Frame = 1 Query: 22 QQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPSEDSLQLHGQSFEQDEEGHSERFSSVIAGVDVGDADGYYS 804 +QLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAE AASLDSLSREPKNMVVVKSPRSRDTLDRLLG TNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSW GDIEPLLEYYTERTPGAVIESR V + RDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKP EDSLQLHGQSFE DEEGH E FSSVIAGVD+GDADGYYS Sbjct: 142 RQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAETAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWIGDIEPLLEYYTERTPGAVIESREVSMAWHYRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPPEDSLQLHGQSFE-DEEGHGECFSSVIAGVDIGDADGYYS 401
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI) HSP 1 Score: 244 bits (624), Expect = 1.290e-70 Identity = 143/242 (59.09%), Postives = 146/242 (60.33%), Query Frame = 1 Query: 79 KEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPSEDSLQLHGQSFEQDEEGHSERFSSVIAGVDVGDADGYYS 804 + + SFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLG TNCVLAAEHGAFIRWGKHA WQ VSHFLEIVVTRFRRLLKSK SEDSLQLHGQSFEQDEEGH ERFSSVIAGVD+GDADGYYS Sbjct: 682 EREIRQSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQ----------------------------------------------------------------------------------------VSHFLEIVVTRFRRLLKSKRSEDSLQLHGQSFEQDEEGHGERFSSVIAGVDIGDADGYYS 835
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.720e-57 Identity = 123/266 (46.24%), Postives = 150/266 (56.39%), Query Frame = 1 Query: 4 WCKRFVQQLHDANEGWVRTTARLLQKEHVVM---------------------------------SFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKN-----------MVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIE-PLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRR 666 W R ++QL NEG RTTARLL KEHVV +F +SR RL+ NLEGVLARA +LPEL+ +P + SL LS +VVVKSPRSR+ L+R LG TNCVLAAEHGA +RW ++ W+ LP +D SW +I+ PL T AV RDCDLGHGAWQAKQLHVSLLQ+++ LPI VYAGD+VLEI+PQ M + FL+ VVTR R+ Sbjct: 943 WSTRSMRQLVKGNEGGERTTARLLHKEHVVQPAECTVAAHLISMLTARFAYLTXXXXXXXXXXXAFAFSRCRLIVLNLEGVLARATSLPELLTVPPDVLESLRLLSEXXXXXXXXXXXXXXXVVVVKSPRSREALERCLGQTNCVLAAEHGALMRWSLNSRWEAQLPGLDTSWLREIQNPLDVIKTREVSVAVXXXXXXXXAWHYRDCDLGHGAWQAKQLHVSLLQMARNLPIIVYAGDRVLEILPQAMLGHLDSFLDNVVTRVRQ 1208
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A7S1UL28_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UL28_9STRA) HSP 1 Score: 196 bits (499), Expect = 4.720e-54 Identity = 100/203 (49.26%), Postives = 139/203 (68.47%), Query Frame = 1 Query: 4 WCKRFVQQLHDANEGWVRTTARLLQKEHVVMSFMYSRW-RLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQ 609 W +RF++QL +AN R+ R L +E V+ +++ S R++ LEGV+A AC LPEL+ I A A+L++L P N VV+ S RS +++D LLG+ N VL AE G FI+WGK + W+ +P +D SW D+E +LEYYTERTPG+ +ES+ + RDCDLGHGAWQAKQL VSL LS+RLP VY+G+K++E+ Q Sbjct: 559 WSERFLEQLAEANGDESRSPCRELHREQVLNAYVSSTSARVLVLGLEGVIAPACTLPELLTIGAAEYAALEALCANPTNAVVIVSTRSPESIDALLGNLNAVLVAESGWFIKWGKGSAWECQVPYLDTSWRDDVERVLEYYTERTPGSFMESKSHSIAWHFRDCDLGHGAWQAKQLQVSLTNLSRRLPFCVYSGNKMIEVAQQ 761
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A8J2X0D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0D0_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.830e-44 Identity = 94/227 (41.41%), Postives = 142/227 (62.56%), Query Frame = 1 Query: 4 WCKRFVQQLHDANEGWV-RTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNM-VVVKSPRSRDTLDRLLGHTNC---VLAAEHGAFIRWGKHAHWQPLLPN--VDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFR 663 W +RF+ QL +A E RT R L + + ++ R++ LEGVLA+ AL EL+ +P + L++L +P+N VV+ S RS +TL ++ NC VLAAE G IRWG + ++ + + +D+SW D EPL+ YYTERTPG+V+E + L RDCDL HGAWQA+QL V+L +L+K +P+SV++GDK +E+ P M + V + LE+ + +F+ Sbjct: 650 WARRFLDQLQEAAETKASRTLCRELTVPQLTAPYTKTKRRVIVLELEGVLAKPTALAELIDVPVKILNYLEALCNDPQNRAVVILSARSAETLSKIFEGINCDSLVLAAEEGLSIRWGPNEPFEMQVSDFDLDLSWLDDAEPLIAYYTERTPGSVVERKVSGLAWHYRDCDLNHGAWQARQLQVALGELAKHVPLSVFSGDKFIEVRP--MRLSVPNVLELTLKKFQ 874
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A3F2S1Y1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1Y1_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.370e-44 Identity = 85/209 (40.67%), Postives = 130/209 (62.20%), Query Frame = 1 Query: 4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618 W F++QLH+ +E + + R L + + ++ S RL+ N EGVLA ++PEL + P E L L+++P+N VV+ S RS ++ N VLAAE+G +++W GK+ +W ++PN+D SW + PLLEYYTERTPGA IE + + RDCDL HG WQA +L VSL ++++ LP+SV G++ LE+ PQ+++ Sbjct: 253 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSHRLIFINYEGVLAAEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWMGKNEYWHCMVPNMDTSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 461
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A421GJV8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GJV8_9STRA) HSP 1 Score: 166 bits (420), Expect = 8.210e-44 Identity = 85/209 (40.67%), Postives = 130/209 (62.20%), Query Frame = 1 Query: 4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618 W F++QLH+ +E + + R L + + ++ S RL+ N EGVLA ++PEL + P E L L+++P+N VV+ S RS ++ N VLAAE+G +++W GK+ +W ++PN+D SW + PLLEYYTERTPGA IE + + RDCDL HG WQA +L VSL ++++ LP+SV G++ LE+ PQ+++ Sbjct: 175 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSHRLIFINYEGVLAAEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWMGKNEYWHCMVPNMDTSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 383
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: W2FY48_PHYPR (Trehalose-phosphatase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2FY48_PHYPR) HSP 1 Score: 167 bits (424), Expect = 1.370e-43 Identity = 86/209 (41.15%), Postives = 131/209 (62.68%), Query Frame = 1 Query: 4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618 W F++QLH+ +E + + R L + + ++ S RL+ N EGVLA ++PEL + P E L L+++P+N VV+ S RS ++ N VLAAE+G +++W G++ HW ++PN+DMSW + PLLEYYTERTPGA IE + + RDCDL HG WQA +L VSL ++++ LP+SV G++ LE+ PQ+++ Sbjct: 531 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLIFINYEGVLAVEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEHWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKDSSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 739
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A329SM09_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SM09_9STRA) HSP 1 Score: 166 bits (421), Expect = 4.390e-43 Identity = 85/209 (40.67%), Postives = 131/209 (62.68%), Query Frame = 1 Query: 4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618 W F++QLH+ +E + + R L + + ++ S RL+ N EGVLA ++PEL + P E L L+++P+N VV+ S RS ++ N VLAAE+G +++W G++ +W ++PN+DMSW + PLLEYYTERTPGA IE + + RDCDL HG WQA +L VSL ++++ LP+SV G++ LE+ PQ+++ Sbjct: 531 WADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLIFINYEGVLAAEASIPELAYPPQELIWQLSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEYWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQKVS 739
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Match: A0A3M6VHA7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHA7_9STRA) HSP 1 Score: 166 bits (421), Expect = 4.400e-43 Identity = 87/209 (41.63%), Postives = 129/209 (61.72%), Query Frame = 1 Query: 4 WCKRFVQQLHDANE-GWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGHT--NCVLAAEHGAFIRW-GKHAHWQPLLPNVDMSWTGDIEPLLEYYTERTPGAVIESRWVCLVAPIRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMN 618 W +F++QLH+ E V + R L + + ++ S RL+ N EGVLA ++PEL + P E L L+ +P+N VV+ S RS ++ N VLAAE+G +++W G + W L+PN+DMSW I PLLEYYTERTPGA IE + + RDCDL HG WQA +L VSL ++++ LP+S+Y G++ LE+ P++++ Sbjct: 534 WADKFLEQLHECREENAVSVSGRELSRRDMTSAYSRSSRRLIFINYEGVLAVEASIPELAYPPQELIWQLSMLTSDPRNTVVLVSARSMSVCEQWFAELSGNLVLAAEYGVYVKWIGDNEGWHCLVPNMDMSWWEHILPLLEYYTERTPGAYIERKDSSIAWHYRDCDLDHGLWQASELLVSLREITRSLPVSLYPGNRYLEVRPEKVS 742 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10113.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10113.142.1 >prot_Ecto-sp13_S_contig10113.142.1 ID=prot_Ecto-sp13_S_contig10113.142.1|Name=mRNA_Ecto-sp13_S_contig10113.142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp LWCKRFVQQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLback to top mRNA from alignment at Ecto-sp13_S_contig10113:171..4103+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10113.142.1 ID=mRNA_Ecto-sp13_S_contig10113.142.1|Name=mRNA_Ecto-sp13_S_contig10113.142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10113:171..4103+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10113:171..4103+ >mRNA_Ecto-sp13_S_contig10113.142.1 ID=mRNA_Ecto-sp13_S_contig10113.142.1|Name=mRNA_Ecto-sp13_S_contig10113.142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10113:171..4103+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |