mRNA_Ecto-sp13_S_contig10103.136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10103.136.1 vs. uniprot
Match: A0A6H5JR78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE) HSP 1 Score: 903 bits (2334), Expect = 1.590e-310 Identity = 503/613 (82.06%), Postives = 533/613 (86.95%), Query Frame = 1 Query: 4 RQRLGRHFALAWVIQRAARSRQRQISAFWHWRLAPAPATAPILRQREWEESIGSGAVVAETAPRRQDASAEPATARVEEDRQDLPDAATDSEVDSSTIATATAPQAAVTTLAEDLRTQPEPAASDEVGQEEGEAPHCGTWTVADRVQDLERKEEEVRSQSEDEKVRRKASSGQREGLRTAAQEDAKKAPSGRTPEDAAAGGTSGX----GGDGLRTPVLREEISDRFSSAPARASSPVCRGHSSPQTGETGFATARGGGGAGYVPDATRQTEGVETPMTSSSAPPMSDVRGLSPQVLEGLSASNMTSATGESELQEPPSAAASSSHMNDIGDTLPERAGTGSHAGIDGDRAGSRPEAIRTSEIRLPYQGETADAVRDFLPFFRDHFDVTIRRVPLESAVNITGKAEDGVVNVAAECFEHGLRVCRDNDVKAADFLLLRARVRSARDPDGSQYLLPLEVSAKLRRRLRDLGDRYGVVINSVPSRSVGLGSXXXXXXXXXXXLPQYLCCPRVDTDDDTQDHRKVVQIWGLRNCVIGAFDRVVASLLDHMEYVVKLGPVGADERKRLRFKGKNVNYVVEGGVTEVRISGRPHLAAGNISTVLQSLPERLPNQVQCV 1830
R+RLGRHFAL WVIQR ARS QRQISAFW WRLAPAPATAPILRQREWEESIGSGAVVAETAPRR+DASAEPATARVE A PQAAVTTLA DLRTQPE AASD+ +E+GEAPHCGT TVADRVQ LER+EEEVRSQ EDEK R KA SGQREGLRTAAQE+AK+APSGRTPED A G+S GGDGLR VL+EE SDRF+SAPA A SPVCRGHSSP+TGETGFA ARGGGGAG VPDATRQT+G ETPMT SSAPPM+D+RG SPQVLEGLSASNMTSATG+SELQ PPSAAASSS+MND+GDTLPERAG GSHAGIDGDR GSRPEAIRTS++RLPYQGETADAVRDFLPFFRDHFDVTIR VP ESAV I GKA DGVVNVAAECFEHGLR+CRDNDVKAADFLLLRARVRS RDPDGSQYLLPLEVSAKLRR+LRDLGDRYGVVIN VPSRS GLGS XXXXXXXX LP+Y+CCPRVDT+D+TQDHRKVVQIWGLRNCV+GAFDRVVASLLD+ EYVVKLGPVGADE K LRFKGKNVN EGGVTEVRISGRPHLA NISTVLQS+PE LP+QVQCV
Sbjct: 847 RKRLGRHFALGWVIQRVARSHQRQISAFWRWRLAPAPATAPILRQREWEESIGSGAVVAETAPRRRDASAEPATARVEXXXXXXXXXXXXXXXXXXXXXXA--PQAAVTTLAADLRTQPESAASDDAREEKGEAPHCGTRTVADRVQHLERREEEVRSQREDEKARGKAPSGQREGLRTAAQENAKQAPSGRTPEDGAGAGSSDGXXXDGGDGLRASVLKEESSDRFASAPAPAPSPVCRGHSSPRTGETGFAAARGGGGAGCVPDATRQTKGGETPMTGSSAPPMNDIRGSSPQVLEGLSASNMTSATGDSELQGPPSAAASSSNMNDLGDTLPERAGNGSHAGIDGDRTGSRPEAIRTSDLRLPYQGETADAVRDFLPFFRDHFDVTIRNVPSESAVCI-GKAPDGVVNVAAECFEHGLRLCRDNDVKAADFLLLRARVRSTRDPDGSQYLLPLEVSAKLRRKLRDLGDRYGVVINGVPSRSEGLGSGXXXXXXXX--LPKYVCCPRVDTEDNTQDHRKVVQIWGLRNCVVGAFDRVVASLLDNTEYVVKLGPVGADELKGLRFKGKNVNCFTEGGVTEVRISGRPHLADANISTVLQSMPEVLPDQVQCV 1454
BLAST of mRNA_Ecto-sp13_S_contig10103.136.1 vs. uniprot
Match: D7FTQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI) HSP 1 Score: 809 bits (2090), Expect = 6.630e-277 Identity = 470/617 (76.18%), Postives = 498/617 (80.71%), Query Frame = 1 Query: 1 SRQRLGRHFALAWVIQRAARSRQRQISAFWHWRLAPAPATAPILRQREWEESIGSGAVVAETAPRRQDASAEPATARVEEDRQDLPDAATDSEVDSSTIATATAPQAAVTTLAEDLRTQPEPAASDEVGQEEGEAPHCGTWTVADRVQDLERKEEE-VRSQSEDEKVRRKASSGQREGLRTAAQEDAKKAPSGRTPEDAAAGGTSGXGGDGLRTPVLREEISDRFSSAPARASSPVCRGHSSPQTGETGFATARGGGGAGYVPDATRQTEGVETPMTSSSAPPMSDVRGLSPQVLEGLSASNMTSATGESELQEPPSAAASSSHMNDIGDTLPERAGTGSHAGIDGDRAGSRPEAIRTSEIRLPYQGETADAVRDFLPFFRDHFDVTIRRVPLESAVNITGKAEDGVVNVAAECFEHGLRVCRDNDVKAADFLLLRARVRSARDPDGSQYLLPLEVSAKLRRRLRDLGDRYGVVINSVPSRSVGLGSXXXXXXXXXXXLPQYLCCPRVDTDDDTQDHRKVVQIWGLRNCVIGAFDRVVASLLDHMEYVVKLGPVGADERKRLRFKGKNVNYVVEGGVTEVRISGRPHLAA-GNISTVLQSLPERLPNQVQCVSASYS 1845
++QRLGRH+AL W+IQR ARS QRQISAFW WRLAPAPATA ILR REWEESIGSG VVAETA RR+DASAEPATARV+E+RQ+L D T S D+S ATATAPQAAVTTLA DLRTQ E AASDEVGQEEGEAPHCGTW VADRVQDLERKEEE VRSQ EDEK R K SS QREGLRTAAQEDAK+ PSGRTPEDAA G+SG GG GETGFATARG VP ATRQTEG ET VLEGLSASNMTSATG+SELQ PPSAA+SSSHMNDIGDTLP RA GSHAGIDGDRAGSRPEAI TSE+RLP QGETADAVRDF PFFRDHFDVTIR VPLESAV I+GKAEDGVV+VAAECFEHGLRVCRD++VKAADFLLLRARVRSARDPDGSQYLLPLEVS KLRRRLRDLGD YGVVINSVP+RSVGLGSXXXXXXXXX LP+YLCCP VDTDD+TQDHRKVVQIWGLR+CV+GAFDRVVASLLD+MEYVVKLG VGADE KRLRFKGKNV Y EGGVT VRISGRPHL A N+STVLQSLPERLP++VQCV Y+
Sbjct: 773 AQQRLGRHYALGWLIQRVARSHQRQISAFWRWRLAPAPATAAILRPREWEESIGSGTVVAETALRRRDASAEPATARVKEERQELLDTGTAS--DTSATATATAPQAAVTTLAADLRTQSETAASDEVGQEEGEAPHCGTWAVADRVQDLERKEEEEVRSQREDEKARGKESSRQREGLRTAAQEDAKQVPSGRTPEDAAGAGSSGAGGG----------------------------------AGETGFATARGXXXXXCVPGATRQTEGGET-------------------VLEGLSASNMTSATGDSELQGPPSAASSSSHMNDIGDTLPGRAENGSHAGIDGDRAGSRPEAIHTSEVRLPCQGETADAVRDFSPFFRDHFDVTIRHVPLESAVYISGKAEDGVVHVAAECFEHGLRVCRDDEVKAADFLLLRARVRSARDPDGSQYLLPLEVSIKLRRRLRDLGDLYGVVINSVPARSVGLGSXXXXXXXXXG-LPEYLCCPGVDTDDNTQDHRKVVQIWGLRDCVVGAFDRVVASLLDNMEYVVKLGSVGADELKRLRFKGKNVKYFTEGGVTGVRISGRPHLFADANVSTVLQSLPERLPDKVQCVDMKYT 1333
BLAST of mRNA_Ecto-sp13_S_contig10103.136.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 4.770e-15 Identity = 50/70 (71.43%), Postives = 53/70 (75.71%), Query Frame = 1 Query: 610 SGXGGDGLRTPVLREEISDRFSSAPARASSPVCRGHSSPQTGETGFATARGGGGAGYVPDATRQTEGVET 819
+G G DGLR VLR+EI+ R SSAPA ASSPVCRGH S QTGETGFA ARGGGG G V AT QTE ET
Sbjct: 600 NGGGRDGLRPSVLRDEIAGRLSSAPASASSPVCRGHPSSQTGETGFAAARGGGGDGCVQGATCQTEAGET 669
BLAST of mRNA_Ecto-sp13_S_contig10103.136.1 vs. uniprot
Match: D7FYB9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.550e-14 Identity = 48/64 (75.00%), Postives = 50/64 (78.12%), Query Frame = 1 Query: 628 GLRTPVLREEISDRFSSAPARASSPVCRGHSSPQTGETGFATARGGGGAGYVPDATRQTEGVET 819
GLR VLR+EI+ R SSAPA ASSPVCRGH SPQTGETGFA ARGGGG G V AT QTE ET
Sbjct: 14 GLRPSVLRDEIAGRLSSAPASASSPVCRGHPSPQTGETGFAAARGGGGDGCVQGATCQTEAGET 77
BLAST of mRNA_Ecto-sp13_S_contig10103.136.1 vs. uniprot
Match: A0A6H5KS24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS24_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.490e-11 Identity = 52/83 (62.65%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 28 ALAWVIQRAARSRQRQISAFWHWRLAPAPATAPILRQREWEESIGSGAVVAETAPRRQDASAEPATARVEEDRQDLPDAATDS 276
AL VIQRAARS Q Q A ILRQRE EESIG GA VAET RR+DASAEPATARVEE+RQ+LP+ A DS
Sbjct: 678 ALGRVIQRAARSHQPQXXXXXXXXXXXXXXXAAILRQREREESIGRGAAVAETPLRRRDASAEPATARVEEERQELPNTAADS 760 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10103.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10103.136.1 >prot_Ecto-sp13_S_contig10103.136.1 ID=prot_Ecto-sp13_S_contig10103.136.1|Name=mRNA_Ecto-sp13_S_contig10103.136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=615bp SRQRLGRHFALAWVIQRAARSRQRQISAFWHWRLAPAPATAPILRQREWEback to top mRNA from alignment at Ecto-sp13_S_contig10103:443..5576- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10103.136.1 ID=mRNA_Ecto-sp13_S_contig10103.136.1|Name=mRNA_Ecto-sp13_S_contig10103.136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10103:443..5576- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10103:443..5576- >mRNA_Ecto-sp13_S_contig10103.136.1 ID=mRNA_Ecto-sp13_S_contig10103.136.1|Name=mRNA_Ecto-sp13_S_contig10103.136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1845bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10103:443..5576- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |