mRNA_Ecto-sp13_S_contig10101.134.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10101.134.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI) HSP 1 Score: 960 bits (2482), Expect = 0.000e+0 Identity = 541/637 (84.93%), Postives = 560/637 (87.91%), Query Frame = 1 Query: 1 MIAYVLCRNASSPVPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFIQAQQELTILTIVIPILYVALYTTVNAALQMSVGLVVVGGPVAMFVSVKLCQSSGFGGPGTFVVVFLHMFIKLLQLFGDDDFADSERDGYDEDDARGRPSVSAPGTPRVSRSPRVLPSLPPYPTIAVGADVSAAAAAVDNGNGGVDGEADGS----SDDDVSSCEAEXXXXXXXXXXXSHAAGDGVDADRGRATPSERNRRGLTPAAAPPRGRKSLDHGGDHGDTTGASEEFRLPPPTVAPHQPPLGQQAQDTEGRGXXXXXXXXXXXXXXXXSASPSFLSASARRQFNPIHASLLPSAVSGVPSTGGGGSGDDRSGGRVEQRQRQ--RPPVRSWKSERPLYRRSTSGTRGGREDNKTSDSVVRNGRDASLSALGGVEGGDGIGGASGWGEVGVGGAGGRYEPGWQYTGAKEGGGEGGDGSAEPSCKRRIRRRCLSVDDLQFLSSRKRNEEWTADWELLTGRRNTCDHKGVGSGRSAAGEGGNEQNGGPRLGRTTSSDTAKQNGTQGAADGLDSNDYDESHYLRPAWMRSGVASGVASSLAAAMETNSNAQFVFKGTMRGGCALLAILSLFLASCQIISLLQEQHEW 1893
MIAYVLCRNASS VPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFIQAQQELTILTIVIPILYVALYTTVNAALQMSVGLVVVGGPVAMFVSVKLCQSSGFGGPGTFVVVFLHMFIKLLQLFGDDDFADSERDGYDEDDARGRPSVSAPGTPRVSRSP LPSLPPYPTIAV ADV+ SDDDVSSCEAE SHAAG GVDA+ GRATPSER+RRG+TPAAAPPRGRKSLDHGGD GDTT SEEFRLPPPTVAPHQPP GQQAQDTEGRGXXXXXXXXXX SASPSFLSASARRQFNPIHASLLPSAVSGVPSTGGGGSGD R+GG VEQ RPPVRSWKSERPLYRRS SGTRGGRED++TSD VR+GR+ASLSALG V+ GDG+GGA+ WG+ G GGAGGRYEPG QYTGAKEGGGEGG+GS EPSCKRRIRRRCLSVDDLQFLSSR+RNE WTADWE LTGRRNT D KGVG+GRSAAGEGGNEQNGGPRLGR+TSSDTAK+NGTQG AD LDSN+Y E HYLRPAWMRSGVASGVASSLAAAMETNSNAQFVFKGTMRGGCALLAILSLFLASCQIISLLQEQHEW
Sbjct: 1 MIAYVLCRNASSAVPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFIQAQQELTILTIVIPILYVALYTTVNAALQMSVGLVVVGGPVAMFVSVKLCQSSGFGGPGTFVVVFLHMFIKLLQLFGDDDFADSERDGYDEDDARGRPSVSAPGTPRVSRSPCALPSLPPYPTIAVAADVAXXXXXXXXXXXXXXXXXXXXXXXXSDDDVSSCEAEEEGGIGGDADGSHAAGGGVDANSGRATPSERSRRGMTPAAAPPRGRKSLDHGGDDGDTTCTSEEFRLPPPTVAPHQPPFGQQAQDTEGRGXXXXXXXXXXRAS---SASPSFLSASARRQFNPIHASLLPSAVSGVPSTGGGGSGDGRTGGSVEQXXXXXXRPPVRSWKSERPLYRRSMSGTRGGREDSETSDPAVRDGRNASLSALGDVKSGDGVGGATDWGQFGGGGAGGRYEPGCQYTGAKEGGGEGGEGSTEPSCKRRIRRRCLSVDDLQFLSSRRRNEAWTADWEHLTGRRNTFDRKGVGNGRSAAGEGGNEQNGGPRLGRSTSSDTAKRNGTQGTADVLDSNNYYEPHYLRPAWMRSGVASGVASSLAAAMETNSNAQFVFKGTMRGGCALLAILSLFLASCQIISLLQEQHEW 634
BLAST of mRNA_Ecto-sp13_S_contig10101.134.1 vs. uniprot
Match: A0A6H5KV83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV83_9PHAE) HSP 1 Score: 718 bits (1854), Expect = 6.740e-254 Identity = 421/519 (81.12%), Postives = 438/519 (84.39%), Query Frame = 1 Query: 355 MFIKLLQLFGDDDFADSERDGYDEDDARGRPSVSAPGTPRVSRSPRVLPSLPPYPTIAVGADVSAAAAAVDNGNGGVDGEADGSSDDDVSSCEAEXXXXXXXXXXXSHAAGDGVDADRGRATPSERNRRGLTPAAAPPRGRKSLDHGGDHGDTTGASEEFRLPPPTVAPHQPPLGQQAQDTEGRGXXXXXXXXXXXXXXXXSASPSFLSASARRQFNPIHASLLPSAVSGVPSTGGGGSGDDRS------GGRVEQRQRQRPPVRSWKSERPLYRRSTSGTRGGREDNKTSDSVVRNGRDASLSALGGVEGGDGIGGASGWGEVGVGGAGGRYEPGWQYTGAKEGGGEGGDGSAEPSCKRRIRRRCLSVDDLQFLSSRKRNEEWTADWELLTGRRNTCDHKGVGSGRSAAGEGGNEQNGGPRLGRTTSSDTAKQNGTQGAADGLDSNDYDESHYLRPAWMRSGVASGVASSLAAAMETNSNAQFVFKGTMRGGCALLAILSLFLASCQIISLLQEQHEW 1893
MFIKLLQLFGDDDFA SERDGYDEDDARGRPSVSAPGTPRVSRSPRVLPSLPPYPTIAV A+VSA AA VDNGNGGV+GEADG SDDDVSSCEAE SHA GVDADRGR P ER+RRG+ AAAPPRGRKSLDHGG GDTT ASEEFRLPP XXXXXXXXXXXXXXXX ASPSFLSASARRQFNPIHASLLPSA SGVPSTGGG GG VEQ QRQRPPVRSWKSE PLYRRS SGTRGGREDN+TSDS VR+GR+ASLSALG VEGGDGIGGA+ WG+ G GGAGGRY+PGWQYTGA EGGGEGGDGS EPSCKRRIRRRCLSVDDLQFLSSR+RNEEWTADWE LTGRRNT DHKGVG+GRSAAGEGGNEQNGGPRLGR+TSSDTAK++ TQG AD LDSN+Y E HYLRPAWMRSGVASGVASSLAAA+ETNSNAQFVFKGTMRGGCALLAILSLFLASCQIISLLQEQHEW
Sbjct: 1 MFIKLLQLFGDDDFAASERDGYDEDDARGRPSVSAPGTPRVSRSPRVLPSLPPYPTIAVAANVSATAA-VDNGNGGVEGEADGGSDDDVSSCEAEEGGGVGGDADDSHATSGGVDADRGRVAPPERSRRGMRLAAAPPRGRKSLDHGGIDGDTTCASEEFRLPPXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPSFLSASARRQFNPIHASLLPSAASGVPSTGGGXXXXXXXXXXXXXGGSVEQWQRQRPPVRSWKSEWPLYRRSMSGTRGGREDNETSDSAVRDGRNASLSALGSVEGGDGIGGATDWGQFGGGGAGGRYQPGWQYTGANEGGGEGGDGSTEPSCKRRIRRRCLSVDDLQFLSSRRRNEEWTADWERLTGRRNTFDHKGVGNGRSAAGEGGNEQNGGPRLGRSTSSDTAKRSDTQGTADSLDSNNYYEPHYLRPAWMRSGVASGVASSLAAAIETNSNAQFVFKGTMRGGCALLAILSLFLASCQIISLLQEQHEW 515
BLAST of mRNA_Ecto-sp13_S_contig10101.134.1 vs. uniprot
Match: A0A835YVP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP4_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.530e-21 Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 1 Query: 1 MIAYVLCRNASSPVPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFIQAQQELTILTIVIPILYVALYTTVNAALQMS--VGLVVVGGPVAMFVSVKLCQSSGFGGPGTFVVVFLHMFIKL 369
++A +LC NASSP P +LR FQNLK SF+++ FF P+MGF+ AQ+ELT+LT+VIPI YV LY V+AA++ + VGL + A+ S+ LC S FGGPGT ++ LH+F KL
Sbjct: 286 VLALILCGNASSPSPAIFQLREVFQNLKASFVLSCCLFFTTTLLHPSMGFLDAQRELTVLTVVIPITYVVLYQVVDAAMRWTSWVGLALASIAAAVL-SIVLCSYSNFGGPGTVAIMGLHIFGKL 409
BLAST of mRNA_Ecto-sp13_S_contig10101.134.1 vs. uniprot
Match: G4Z971_PHYSP (Lipase_3 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z971_PHYSP) HSP 1 Score: 66.2 bits (160), Expect = 1.490e-7 Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1 Query: 25 NASSPVPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFIQAQQELTILTIVIPILYVALYTTVNAALQMSVGLVVVGGPVAM------FVSVKLCQSSGFGGPGTFVVVFLHMFIKLLQ 375
N S + L FF+ LK +F++ F R C P+MGF+ AQ ELTI+ +++P +YV + +SV V++ GP+A+ FV K+ + P FVVV L +F + L+
Sbjct: 314 NVSECDSNKKALSGFFERLKFTFVIGQGIVFFRACVHPSMGFVHAQLELTIINLLLPSIYVVSLICLRMVSLLSVRAVLIDGPLALGLAGVIFVGSKMTEK-----PHVFVVVGLFLFDRFLR 431
BLAST of mRNA_Ecto-sp13_S_contig10101.134.1 vs. uniprot
Match: A0A5D6XN61_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN61_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.940e-7 Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 25 NASSPVPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFIQAQQELTILTIVIPILYVALYTTVNAALQMSVGLVVVGGPVAMFVSVKLCQSSG-FGGPGTFVVVFLHMFIKLLQLF 381
N ++ P ++L FF+ LK +F+ A F+R C P+MGF+ AQ ELTI+ +++P +YV + L ++ + V P+A+ V + S P F+VV L +F L+ +
Sbjct: 345 NVAACEPSQKQLAGFFERLKYTFVFAQAIVFVRACVHPSMGFVHAQLELTIINLLLPSIYVVSLIMLRLLLLLNAKSIAVTVPLALGVGGAIFYGSRKTARPHPFIVVSLFLFDIFLRWY 464 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10101.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10101.134.1 >prot_Ecto-sp13_S_contig10101.134.1 ID=prot_Ecto-sp13_S_contig10101.134.1|Name=mRNA_Ecto-sp13_S_contig10101.134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=632bp MIAYVLCRNASSPVPKDRELRSFFQNLKTSFIVAVTFFFLRGCASPTMGFback to top mRNA from alignment at Ecto-sp13_S_contig10101:505..4462- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10101.134.1 ID=mRNA_Ecto-sp13_S_contig10101.134.1|Name=mRNA_Ecto-sp13_S_contig10101.134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3958bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10101:505..4462- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10101:505..4462- >mRNA_Ecto-sp13_S_contig10101.134.1 ID=mRNA_Ecto-sp13_S_contig10101.134.1|Name=mRNA_Ecto-sp13_S_contig10101.134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10101:505..4462- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |