mRNA_Ecto-sp13_S_contig100980.130.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI) HSP 1 Score: 185 bits (470), Expect = 1.140e-56 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1 Query: 1 LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQV R
Sbjct: 90 LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVGR 180
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A835YJM0_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.090e-30 Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1 Query: 10 GLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
G+R L PP YVV+ F S EC+ LI A +M SPVVG G GE+S SRTS+SC+ AREDLP++CHKV LTGKP +HLELPQV R
Sbjct: 16 GVRQLHGHPPFYVVEGFLSTQECEGLIRQADGFMCTSPVVGKGNGEISPSRTSTSCYFAREDLPSICHKVCMLTGKPADHLELPQVGR 103
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A8J2S9J3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.460e-29 Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 1 Query: 4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
YPGL + PP++ V F S ECD LI A +M +PVVGAG GEVS SRTSS+C+LAREDLPT+C KV ALTG P+EHLELPQV R
Sbjct: 38 YPGLTAVHTDPPVFTVAIFLSEAECDDLINSAQGHMTPAPVVGAGNGEVSVSRTSSTCYLAREDLPTICTKVCALTGCPVEHLELPQVGR 127
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S2UA87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA87_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.250e-29 Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1 Query: 4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
YPGL L +PP++ VD+F S ECD LIA + + +PVVG G GEVSE+RTSS+C+LAREDLP +K+MALTGKP+EH ELPQ+ R
Sbjct: 59 YPGLHVLNSSPPVFCVDNFLSPEECDFLIASSLDSFAPAPVVGKGGGEVSETRTSSTCYLAREDLPLYMNKIMALTGKPLEHCELPQIGR 148
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: F0Y4P1_AURAN (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P1_AURAN) HSP 1 Score: 111 bits (278), Expect = 5.330e-29 Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1 Query: 34 PPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
PP+Y V +F + ECDALI A ++M +PVVG G GEVS SRTSS+C+LAREDLP+VC KV ALTGKP+EHLELPQV R
Sbjct: 1 PPIYTVQNFLTEEECDALIDSAKDHMTPAPVVGPGNGEVSVSRTSSTCYLAREDLPSVCTKVCALTGKPLEHLELPQVGR 80
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S4N7N8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7N8_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.480e-27 Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 7 PGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
PGLR L PP++ VDDF S ECD LI A + + +PVVG G GEVS++RTSS+CFLAREDLP KV ALTGKP H ELPQV R
Sbjct: 9 PGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGR 97
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A6U6I918_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I918_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.860e-27 Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 1 Query: 4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
YPGLR L PP++ VDDF S ECD LI A + + +PVVG G GEVS++RTSS+CFLAREDLP KV ALTGKP H ELPQV R
Sbjct: 148 YPGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGR 237
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S2YBM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBM7_9STRA) HSP 1 Score: 107 bits (268), Expect = 4.760e-27 Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1 Query: 4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
YPGLR L +PP++ VD+F + ECD L+ +A + +PVVG G GE+S SRTSS+C+LAREDLP + KV LTGKP++H ELPQV R
Sbjct: 26 YPGLRVLNTSPPMFCVDNFLTPFECDFLVQVAQDSFGPAPVVGKGVGEISPSRTSSTCYLAREDLPDLLRKVSLLTGKPMDHCELPQVGR 115
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S1UYE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA) HSP 1 Score: 111 bits (277), Expect = 5.580e-27 Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1 Query: 4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
YPGLR L TPP++ VD+F S EC L+ +A + +PVVG GAGEVS SRTSS+C+LAREDLP KV LTGKPIEH ELPQV R
Sbjct: 184 YPGLRLLNATPPIFAVDNFLSPFECQFLMEVAQDSFGPAPVVGKGAGEVSPSRTSSTCYLAREDLPDYLRKVSLLTGKPIEHCELPQVGR 273
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A6V2IM91_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IM91_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.330e-26 Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVR 270
YPG+R + +PP++ VD+F + EC LI A + +PVVG GAGE+S+SRTSS+C+LAREDLP KV ALTGKP+EH ELPQVR
Sbjct: 188 YPGVRMIHSSPPIFTVDNFLTTEECHFLIHSATDSFGPAPVVGKGAGELSKSRTSSTCYLAREDLPEYMMKVTALTGKPMEHCELPQVR 276 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100980.130.1 >prot_Ecto-sp13_S_contig100980.130.1 ID=prot_Ecto-sp13_S_contig100980.130.1|Name=mRNA_Ecto-sp13_S_contig100980.130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVback to top mRNA from alignment at Ecto-sp13_S_contig100980:37..333- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100980.130.1 ID=mRNA_Ecto-sp13_S_contig100980.130.1|Name=mRNA_Ecto-sp13_S_contig100980.130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100980:37..333- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100980:37..333- >mRNA_Ecto-sp13_S_contig100980.130.1 ID=mRNA_Ecto-sp13_S_contig100980.130.1|Name=mRNA_Ecto-sp13_S_contig100980.130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100980:37..333- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |