mRNA_Ecto-sp13_S_contig10098.129.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A6H5K9M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M8_9PHAE) HSP 1 Score: 152 bits (385), Expect = 2.950e-41 Identity = 76/101 (75.25%), Postives = 78/101 (77.23%), Query Frame = 1 Query: 1 LYPPSWYDPKQADRSHPDSSLVLEYVHGYAGETPDVLSSGVGG--------------------NTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 LYPPSWYDPKQAD+S PDSSLVLEYVHGYAGETPDVLS GVGG +TNVLWLRSGEIVYPAAGVVVIHDFETNRQRFF GHDE Sbjct: 761 LYPPSWYDPKQADKSRPDSSLVLEYVHGYAGETPDVLSRGVGGKFGGXXXXXXXXXXRNSATRSTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFTGHDE 861
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: D7G7A1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A1_ECTSI) HSP 1 Score: 144 bits (363), Expect = 2.750e-38 Identity = 73/104 (70.19%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 1 LYPPSWYDPKQADRSHPDSSLVLEYVHGYAGETPDVLSSGVGG-----------------------NTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 LYPPSWYDPKQADRS PDS LVLEYVHGYAGETPDVLS G G +TNV+WLRSGEIVYPAAGVVVIHDFETNRQRFF GHDE Sbjct: 567 LYPPSWYDPKQADRSRPDSGLVLEYVHGYAGETPDVLSGGGVGXXXXXXXXXXXXXXXXXRNSATRSTNVVWLRSGEIVYPAAGVVVIHDFETNRQRFFTGHDE 670
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A835YP67_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP67_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.430e-17 Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 1 LYPPSWYDPKQ--ADRSHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRF 225 +YPPS YD D S PDSSL LEYVHGY+G+ ++ G TNVLWL+SGE+V+PA+ VVVIHDF +NRQ F Sbjct: 619 VYPPSAYDDTTFPRDTSPPDSSLSLEYVHGYSGDGRGGGAARATG-TNVLWLKSGELVFPASAVVVIHDFTSNRQPF 694
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A7S1XVQ1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVQ1_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.740e-13 Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1 Query: 1 LYPPSWYDPKQADR----SHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHD 240 +YPPS D + P +L L+YV+GY G+ GGN V WL+SGE+V+PAA VV+ ++ETN QRFF GHD Sbjct: 650 VYPPSSLDATDIGALEGATPPGQNLTLDYVYGYNGDYNRPAGPSYGGN--VKWLKSGELVFPAAAAVVVFNYETNTQRFFLGHD 731
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A7S3VPE2_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VPE2_DUNTE) HSP 1 Score: 71.2 bits (173), Expect = 1.280e-12 Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 1 Query: 1 LYPPSWYDPKQADRSH--PDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 ++PPS ++P+ A+RS PDS L+LE+V+GY G G + N+ +L +GE+VY AAGV ++++ T++QRFF GHD+ Sbjct: 194 VWPPSDWNPQLAERSAQLPDSRLMLEFVYGYDGFQ--------GTSPNIFYLSTGEVVYYAAGVAIVYNKATHKQRFFLGHDD 268
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: UPI00138FDB03 (77 kDa echinoderm microtubule-associated protein-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FDB03) HSP 1 Score: 55.5 bits (132), Expect = 4.700e-7 Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1 Query: 1 LYPPSWYDPKQADRSHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 LYPP+ + + P +L LE+V+GY G N+++L++GE+VY A VVVI+D + QR + GH++ Sbjct: 657 LYPPTGFVESKFSGQPPSEALCLEWVYGYRGRDC---------RDNLMYLKTGELVYNMAAVVVIYDEQQRTQRHYLGHND 728
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A7S1QE81_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1QE81_NEODS) HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5 Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1 Query: 7 PPSWYDPKQADRSHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 P W K D P+ +L LE+V+GY + NV+W+ ++Y +AGV ++H+ ETN Q+FF GH + Sbjct: 13 PTGWEYGKTDDA--PNVTLELEHVYGYRAQAV---------RQNVVWIDKKTVLYFSAGVGIVHNVETNTQKFFRGHTD 80
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A836CMU8_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU8_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 2.030e-5 Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 1 Query: 49 PDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 P LVLE+VHGY G+T GN + +L +IVYPAA V V+ D E +Q+F+ H + Sbjct: 299 PGQGLVLEWVHGYRGQTS--------GNA-LQYLSRNQIVYPAAAVGVVFDVEARKQQFWTAHKD 354
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A7M5U0J1_9CNID (HELP domain-containing protein n=4 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5U0J1_9CNID) HSP 1 Score: 49.7 bits (117), Expect = 5.070e-5 Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 1 Query: 1 LYPPSWYDPKQADRSHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWL-RSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 LY P+ Y D P+ L L++V+GY G+ N+ + +GE+VY AGVVV++D +TN+QR + H++ Sbjct: 263 LYRPTEYKETNPDGKAPEEQLKLDWVYGYRGKDC---------RDNLFIVPATGELVYNMAGVVVLYDQKTNKQRHYTEHND 335
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Match: A0A1I8J652_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J652_9PLAT) HSP 1 Score: 49.7 bits (117), Expect = 5.180e-5 Identity = 24/71 (33.80%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 31 QADRSHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLRSGEIVYPAAGVVVIHDFETNRQRFFAGHDE 243 Q + PD L L++ HGY + N+ + +SGEI++ A + V+H+ ETN QRF+ GH + Sbjct: 665 QKRKRAPDHGLKLDFAHGYRAYDC---------HRNLFYAQSGEILFNVAAIGVVHNKETNTQRFYTGHTD 726 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10098.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10098.129.1 >prot_Ecto-sp13_S_contig10098.129.1 ID=prot_Ecto-sp13_S_contig10098.129.1|Name=mRNA_Ecto-sp13_S_contig10098.129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp LYPPSWYDPKQADRSHPDSSLVLEYVHGYAGETPDVLSSGVGGNTNVLWLback to top mRNA from alignment at Ecto-sp13_S_contig10098:93..395- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10098.129.1 ID=mRNA_Ecto-sp13_S_contig10098.129.1|Name=mRNA_Ecto-sp13_S_contig10098.129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10098:93..395- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10098:93..395- >mRNA_Ecto-sp13_S_contig10098.129.1 ID=mRNA_Ecto-sp13_S_contig10098.129.1|Name=mRNA_Ecto-sp13_S_contig10098.129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10098:93..395- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |