mRNA_Ecto-sp13_S_contig100972.128.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: UPI0014245902 (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014245902) HSP 1 Score: 213 bits (543), Expect = 6.140e-70 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 Query: 1 TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKLL 321
TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLI+IFEHKGLTCRRLQHDIRV+KVADTFRYIFDRCKTASGEWKLL
Sbjct: 16 TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLINIFEHKGLTCRRLQHDIRVEKVADTFRYIFDRCKTASGEWKLL 122
BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: A0A7C7PZN4_9PROT (Uncharacterized protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PZN4_9PROT) HSP 1 Score: 182 bits (461), Expect = 2.230e-57 Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 1 Query: 7 LALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKLL 321
LALPAQAQLNPFKRSGFEL+ EDI +L+ A ARLY+GE AEVGTVETWSN ASGNTGAVQL+ IFEH+GLTCRRLQHDI+++ V +TFRYIFDRCKTA+GEWKLL
Sbjct: 22 LALPAQAQLNPFKRSGFELTPEDIQMLQTAAARLYQGEAAEVGTVETWSNAASGNTGAVQLVQIFEHQGLTCRRLQHDIKINDVENTFRYIFDRCKTAAGEWKLL 126
BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: UPI0018732B05 (hypothetical protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018732B05) HSP 1 Score: 154 bits (389), Expect = 1.840e-46 Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = 1 Query: 4 SLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKLL 321
+L P QAQLNPF R+GFELS EDI +++ A +LY E+ VGTVETWSN SGNTG+VQLI FEHKGL CRRLQHDI+V VA+ FRYIFDRCK SGEWKLL
Sbjct: 17 ALGAPVQAQLNPFTRAGFELSPEDIEMVKGAAQKLYIDESVPVGTVETWSNPKSGNTGSVQLIGTFEHKGLPCRRLQHDIKVKDVANPFRYIFDRCKVPSGEWKLL 122
BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: A0A8J7SYY7_9PROT (Uncharacterized protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7SYY7_9PROT) HSP 1 Score: 105 bits (262), Expect = 1.010e-26 Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 10 ALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKL 318
A A AQ++PF+R+G LS ED+ALL AAG++LY + +VG +E WSN SGN G + LI+++ + CRR+ H I D + DRC+T +GEWK+
Sbjct: 53 AAEAAAQVSPFRRAGLNLSKEDLALLEAAGSKLYASDAPKVGAIENWSNAKSGNAGTIVLIAVYSWNNMPCRRMSHQITSAARKDPYSVQIDRCRTPAGEWKI 155 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100972.128.1 >prot_Ecto-sp13_S_contig100972.128.1 ID=prot_Ecto-sp13_S_contig100972.128.1|Name=mRNA_Ecto-sp13_S_contig100972.128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWback to top mRNA from alignment at Ecto-sp13_S_contig100972:185..508- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100972.128.1 ID=mRNA_Ecto-sp13_S_contig100972.128.1|Name=mRNA_Ecto-sp13_S_contig100972.128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100972:185..508- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100972:185..508- >mRNA_Ecto-sp13_S_contig100972.128.1 ID=mRNA_Ecto-sp13_S_contig100972.128.1|Name=mRNA_Ecto-sp13_S_contig100972.128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100972:185..508- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |