mRNA_Ecto-sp13_S_contig10096.124.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10096.124.1
Unique Name	mRNA_Ecto-sp13_S_contig10096.124.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	134.8
Seed ortholog evalue	2.3e-29
Seed eggNOG ortholog	2880.D8LJD7
Preferred name	DZIP1
Model size	314
KEGG ko	ko:K16470
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
Exons	3
EggNOG free text desc.	Zinc finger protein
EggNOG OGs	28IYV@1,2QRAI@2759
Ec32 ortholog description	C2H2 zinc finger protein
Ec32 ortholog	Ec-17_001930.1
Cds size	309
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10096:434..1711-
coding sequence from alignment at Ecto-sp13_S_contig10096:434..1711-

protein sequence of mRNA_Ecto-sp13_S_contig10096.124.1

>prot_Ecto-sp13_S_contig10096.124.1 ID=prot_Ecto-sp13_S_contig10096.124.1|Name=mRNA_Ecto-sp13_S_contig10096.124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MVPLEALSNELQDLYGRGSLELEVLQGHVLSDNAVDGLVEFYEQNVPIQA
KESSVVGQSMAEIDLAAKRHAKVGQKGKGGDGALLGQWGDHAEDGSDHAE
KQV

mRNA from alignment at Ecto-sp13_S_contig10096:434..1711-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10096.124.1 ID=mRNA_Ecto-sp13_S_contig10096.124.1|Name=mRNA_Ecto-sp13_S_contig10096.124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10096:434..1711- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAATGGTCCCTCTAGAGGCGTTGTCAAACGAACTCCAAGACCTGTAT
GGCAGGGGGTCCTTAGAATTGGAGGTGCTGCAAGGGCACGTACTATCCGA
CAACGCGGTGAGGGCAAGCTCAAGGCTCAAAGTTCTTCGTACGGCATTAG
ACCTGTAGAACATCCATGTATTCGGAGACGTCGGCACAAGACCCCACCTA
GCCCGCTGGAAAGGGCACTACTAACTACAGTTAGGTACAGAGGAGAAAGA
AACATTGGTTCTTCGAGTACCAGAAACCAAGTGGACGTTAGGGCTACGAA
ACCCATCACATATTCAACGGTTGGGTCAGACAAGGGAACCTGTGCCAGAG
TGTGCGAGATCTCAAAACCATCGCACACACTGTTCCAAAATAGGCTCCAC
GTTTTGCAGTTCTACGATGCATGATTTGCAGATGAGAGAGCCCTTTCGAC
TGTCCAGTGCCTCACAACGTGTCTGACTTGCTTATTTTGCTGTCTCCAAT
TCTTCGTCTGCCATTTCCGAATATTTGATAGATACGCGTGCACCTTGACG
CTATTTATAGATGTTGCTCGCTGAGTCACACTTGATGATCACGATGATTT
TCATTTTTGTTTCATCAGGTGGACGGACTGGTCGAATTCTACGAGCAGAA
TGTGCCAATTCAAGCCAAGGTACGCGAGAAAGGCATTTCATTAAGCACAT
CACCCTTATCGCATTGTATGGTTCACTCTCGTCGCGTCTGTTGGGGCTCC
TGAAGTAGACTATATGCGGATTTGAAGACTGGTTCGGGGGGGCCACGCCA
GTTCAACAACAAAGCGTATATACGTGTGTACCAAACCCAGGTCTCCCCGC
GTGGGCGTCCCTGAACCCGTGCTGGTCGTTCCTCTTGCTCCTCGAATGAG
GTCAACGCTCCAGGCAGTGTGTACAAACATTCCAAATCTGCCGTGCATCG
ATAGTGACAACTTTCGCAGTTTGGTGCTTGTGTTGGTAACCTTTCTTTCC
GAGCGCATAGGAAATACTCGCGGTATTAGCTATTGAGGTGTTCACTGCAC
ATTTGCCTTTGTTGCTTTCGCGAGACCGTGGGCGGTAACAACATGCGGTT
TGCAATCCTCCTCGTTTCACAGGAGTCTTCGGTGGTGGGACAGTCTATGG
CCGAGATCGATTTGGCTGCCAAACGGCATGCCAAAGTCGGCCAGAAGGGG
AAGGGGGGCGACGGTGCTTTACTGGGACAATGGGGAGATCATGCCGAAGA
CGGCAGTGACCACGCCGAAAAGCAGGTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10096:434..1711-

>mRNA_Ecto-sp13_S_contig10096.124.1 ID=mRNA_Ecto-sp13_S_contig10096.124.1|Name=mRNA_Ecto-sp13_S_contig10096.124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10096:434..1711- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCCTCTAGAGGCGTTGTCAAACGAACTCCAAGACCTGTATGGCAG
GGGGTCCTTAGAATTGGAGGTGCTGCAAGGGCACGTACTATCCGACAACG
CGGTGGACGGACTGGTCGAATTCTACGAGCAGAATGTGCCAATTCAAGCC
AAGGAGTCTTCGGTGGTGGGACAGTCTATGGCCGAGATCGATTTGGCTGC
CAAACGGCATGCCAAAGTCGGCCAGAAGGGGAAGGGGGGCGACGGTGCTT
TACTGGGACAATGGGGAGATCATGCCGAAGACGGCAGTGACCACGCCGAA
AAGCAGGTC

mRNA_Ecto-sp13_S_contig10096.124.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

ZOOM

x 1

POSITION

0