mRNA_Ecto-sp13_S_contig100938.123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI) HSP 1 Score: 105 bits (261), Expect = 2.810e-27 Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK Sbjct: 58 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 107
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S3M735_9STRA (Signal peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.590e-22 Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL N D+P+RAGE+VVFKIKDR+IPIVHRVM VHEK Sbjct: 57 SGSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHRVMKVHEK 106
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.670e-22 Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL+N D+P+R GEVVVFKIKDR+IPIVHR+M VHEK Sbjct: 57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRIMKVHEK 106
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S0SWE0_9STRA (Signal peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.670e-22 Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRVM VHEK Sbjct: 57 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVMKVHEK 106
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK) HSP 1 Score: 91.7 bits (226), Expect = 5.310e-22 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL N +P+RAGEVVVFKIKDREIPIVHRVM VHEK Sbjct: 58 SGSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHRVMKVHEK 107
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: F0YAE9_AURAN (Signal peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN) HSP 1 Score: 91.7 bits (226), Expect = 6.850e-22 Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL+N D P+R GEVVVFKIKDR+IPIVHRVM VHEK Sbjct: 57 SGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEK 106
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.160e-22 Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL+N D+P+R GEVVVFKIKDR+IPIVHRV+ VHEK Sbjct: 57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRVLKVHEK 106
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A482SSB0_9ARCH (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSB0_9ARCH) HSP 1 Score: 86.3 bits (212), Expect = 2.910e-21 Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 Query: 10 MEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 MEPAFQRGDILFL N D P+RAGE+VVFKIKDR+IPIVHRVM VHEK Sbjct: 1 MEPAFQRGDILFLTNHDNPIRAGEIVVFKIKDRDIPIVHRVMKVHEK 47
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: W7TFR1_9STRA (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.000e-21 Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRV+ VH+K Sbjct: 58 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQK 107
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.200e-20 Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 Query: 1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150 SGSMEPAFQRGDILFL N D P+R GE+VVFKIKDR+IPIVHRV VHEK Sbjct: 58 SGSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHRVTKVHEK 107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100938.123.1 >prot_Ecto-sp13_S_contig100938.123.1 ID=prot_Ecto-sp13_S_contig100938.123.1|Name=mRNA_Ecto-sp13_S_contig100938.123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp MEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK*back to top mRNA from alignment at Ecto-sp13_S_contig100938:167..319- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100938.123.1 ID=mRNA_Ecto-sp13_S_contig100938.123.1|Name=mRNA_Ecto-sp13_S_contig100938.123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100938:167..319- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100938:167..319- >mRNA_Ecto-sp13_S_contig100938.123.1 ID=mRNA_Ecto-sp13_S_contig100938.123.1|Name=mRNA_Ecto-sp13_S_contig100938.123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100938:167..319- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |