mRNA_Ecto-sp13_S_contig10093.122.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10093.122.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI) HSP 1 Score: 120 bits (302), Expect = 3.140e-32 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 Query: 1 KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAI 180
KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAI
Sbjct: 195 KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAI 254
BLAST of mRNA_Ecto-sp13_S_contig10093.122.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC) HSP 1 Score: 56.2 bits (134), Expect = 1.570e-8 Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 10 RESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWI 171
R++V +G DYWID E+++ KA AK + +Q K+KAEIV PYKQNWI
Sbjct: 45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWI 98 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10093.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10093.122.1 >prot_Ecto-sp13_S_contig10093.122.1 ID=prot_Ecto-sp13_S_contig10093.122.1|Name=mRNA_Ecto-sp13_S_contig10093.122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNback to top mRNA from alignment at Ecto-sp13_S_contig10093:2320..3065+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10093.122.1 ID=mRNA_Ecto-sp13_S_contig10093.122.1|Name=mRNA_Ecto-sp13_S_contig10093.122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10093:2320..3065+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10093:2320..3065+ >mRNA_Ecto-sp13_S_contig10093.122.1 ID=mRNA_Ecto-sp13_S_contig10093.122.1|Name=mRNA_Ecto-sp13_S_contig10093.122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10093:2320..3065+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |