Homology
BLAST of mRNA_Ecto-sp13_S_contig100895.120.1 vs. uniprot
Match: A0A6H5L4Q1_9PHAE (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q1_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.020e-54 Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 Query: 1 RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARARRASLPSELHRIVDATGGAPEKDPVETGGEAAPCL*GSVQTSVAIAESRCPLPPHGSKH 291
RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARA +ASLPSELHRIVDATGGAPEK P ETGG+A CL GSVQ+S+AIAE+RC LPPHGSK+
Sbjct: 25 RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARAHKASLPSELHRIVDATGGAPEKYPAETGGKAVSCLHGSVQSSMAIAENRCALPPHGSKY 121
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 294 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 222 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462506.9882932-UTR-Ecto-sp13_S_contig100895:205..277 | 1681462506.9882932-UTR-Ecto-sp13_S_contig100895:205..277 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig100895 206..277 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462507.0012805-CDS-Ecto-sp13_S_contig100895:277..499 | 1681462507.0012805-CDS-Ecto-sp13_S_contig100895:277..499 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig100895 278..499 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100895.120.1 >prot_Ecto-sp13_S_contig100895.120.1 ID=prot_Ecto-sp13_S_contig100895.120.1|Name=mRNA_Ecto-sp13_S_contig100895.120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARARRASLPSELHRI
VDATGGAPEKDPVETGGEAAPCL* back to topmRNA from alignment at Ecto-sp13_S_contig100895:206..499- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig100895.120.1 ID=mRNA_Ecto-sp13_S_contig100895.120.1|Name=mRNA_Ecto-sp13_S_contig100895.120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100895:206..499- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAATGCCTCCCAACGGTGGTCGGAGGGACGTGCGCTGTTTGCTCCAA
GGATGTGTGCGCTCAGTGTAGCTTGTTCTACGCCGTGAGGCTCTGCGGCC
ACTGCGCGCGAGCGCGCAGGGCAAGCTTGCCCTCGGAACTGCATCGCATC
GTGGACGCGACGGGAGGGGCACCGGAGAAAGACCCTGTAGAGACGGGGGG
GGAGGCTGCGCCGTGCCTCTAAGGCAGCGTTCAAACGTCTGTGGCAATCG
CGGAGAGTCGTTGTCCGCTACCACCACACGGCTCGAAGCATAGT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig100895:206..499- >mRNA_Ecto-sp13_S_contig100895.120.1 ID=mRNA_Ecto-sp13_S_contig100895.120.1|Name=mRNA_Ecto-sp13_S_contig100895.120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100895:206..499- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAATGCCTCCCAACGGTGGTCGGAGGGACGTGCGCTGTTTGCTCCAA
GGATGTGTGCGCTCAGTGTAGCTTGTTCTACGCCGTGAGGCTCTGCGGCC
ACTGCGCGCGAGCGCGCAGGGCAAGCTTGCCCTCGGAACTGCATCGCATC
GTGGACGCGACGGGAGGGGCACCGGAGAAAGACCCTGTAGAGACGGGGGG
GGAGGCTGCGCCGTGCCTCTAA back to top
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