Homology
BLAST of mRNA_Ecto-sp13_S_contig10087.119.1 vs. uniprot
Match:
D8LT81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT81_ECTSI)
HSP 1 Score: 836 bits (2159), Expect = 1.660e-288
Identity = 468/512 (91.41%), Postives = 479/512 (93.55%), Query Frame = 1
Query: 1 VTALREDTLWAESLPGFIRKTLEVQKRGFGRQVALKEREIVILTEEQSELKRDLRNFKADYFSADAEDVIRALRKRQRGLNEQVRYLERQLELAQQSSNVEGGAIEVLEGLLRERDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEVSRMGQKEQQAVAHLRGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGGDGRWGGRVDGTAIATADPRPAYGGGGGA--RHDRRAVNDRAAEGQGPWSVAGLCDSRNFAAPSSAHFDGAGSLSERGVFDFGARISATTAASSLWSSPSTASTASLPGRPRNAMLPSSSHPTKETTHYSPKKTSGVGGRHNQEGRAEGTRYSLKTAGAADSGGQRGGGIFCDADYGXXXXXXXXXSVLSGLAGFHSXXXXXXSSVASLLREERAFQRRTSAHQGSRETEEGLARGHADTFRSLNRHHGGSVPSLVPLNNVGLPVRLRQQ 1530
V ALREDTLWAESLP FI KT+E QK GFGRQVALKEREIVILTEEQ ELKRDLRNFKADY+SADAEDVIRALRKRQRGLN+QVRYLERQLELAQQSS+VEGGAIEVLEGLLR+RDTDKQLVHGLGLKSLEIGLKIGLLETDAG KTVEVSRMGQKEQQAVAHL+GRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGGDG WGGRVDGTAIATA+ RPAYGG R DRR+VNDR AEGQGPWSVAGLCDSR+FAAPSSAHFDGAGSLSERGVFDFGAR SATTAASSLWS PSTASTASLPGRPRN M PSSSH TKETTHY PKKTSGVGGRH+QE RAEGTRYSLKTAGAA+SGGQRGGGIFCDADYGXXXXXXXX SV SGLAGFH XXXXXX SLLREERAFQRRT AHQGSRETEEGLARGHADT RSLNRHHGGSVPSLVPLNNVGLPVRLRQQ
Sbjct: 1011 VNALREDTLWAESLPDFISKTMEAQKGGFGRQVALKEREIVILTEEQRELKRDLRNFKADYYSADAEDVIRALRKRQRGLNDQVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGSKTVEVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGGDGSWGGRVDGTAIATANHRPAYGGXXXXXXRRDRRSVNDRVAEGQGPWSVAGLCDSRDFAAPSSAHFDGAGSLSERGVFDFGARASATTAASSLWSGPSTASTASLPGRPRNTMFPSSSHSTKETTHYFPKKTSGVGGRHDQERRAEGTRYSLKTAGAANSGGQRGGGIFCDADYGXXXXXXXX-SVSSGLAGFHXXXXXXXXXXXSLLREERAFQRRTGAHQGSRETEEGLARGHADTSRSLNRHHGGSVPSLVPLNNVGLPVRLRQQ 1521
BLAST of mRNA_Ecto-sp13_S_contig10087.119.1 vs. uniprot
Match:
A0A6H5KEZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ1_9PHAE)
HSP 1 Score: 811 bits (2094), Expect = 1.910e-286
Identity = 452/534 (84.64%), Postives = 467/534 (87.45%), Query Frame = 1
Query: 1 VTALREDTLWAESLPGFIRKTLEVQKRGFGRQVALKEREIVILTEEQSELKRDLRNFKADYFSADAEDVIRALRKRQRGLNEQVRYLERQLELAQQSSNVEGGAIEVLEGLLRERDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEV----------------------SRMGQKEQQAVAHLRGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGGDGRWGGRVDGTAIATADPRPAYGGGGGAR--HDRRAVNDRAAEGQGPWSVAGLCDSRNFAAPSSAHFDGAGSLSERGVFDFGARISATTAASSLWSSPSTASTASLPGRPRNAMLPSSSHPTKETTHYSPKKTSGVGGRHNQEGRAEGTRYSLKTAGAADSGGQRGGGIFCDADYGXXXXXXXXXSVLSGLAGFHSXXXXXXSSVASLLREERAFQRRTSAHQGSRETEEGLARGHADTFRSLNRHHGGSVPSLVPLNNVGLPVRLRQQ 1530
V ALREDTLWA+SLP FIRKT+E QK GF RQVALKEREIVILTEEQ +LKRDLRN KADY+SAD EDVIRALRKRQRGLNEQVRYLERQLELAQQSS+VEGGAIEVLEGLL +RDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEV SRMGQKEQQAVAHL+GRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARL+TTTTAVGDRRGLGGDG WGGRVDGTAIATA+ RPAYG DRRAVNDRAAEG+GPWSVAGLCDSR+FAAPSS HFDG GSLSERGVFDFG R SATTAASSLWS PSTAST SLPGRPRNAM PSSSH TKETTHY P KTSGVGGRHNQEGRAEGTRYSLKTAGAA+SGGQRGGGI CDA+Y XXXXXSV SGLAGFH SSVASLLREERAFQRRT+A+QGSRETEEGL RGHADTFRSLNRHHGGSVPSLVPLNNVGLPVRLRQQ
Sbjct: 406 VNALREDTLWAKSLPEFIRKTMEAQKGGFDRQVALKEREIVILTEEQRDLKRDLRNVKADYYSADTEDVIRALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLLHQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEVGGPFERRQWRHAETIRFSRRFVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLDTTTTAVGDRRGLGGDGSWGGRVDGTAIATANHRPAYGXXXXXXXXRDRRAVNDRAAEGRGPWSVAGLCDSRDFAAPSSTHFDGTGSLSERGVFDFGPRASATTAASSLWSGPSTASTGSLPGRPRNAMFPSSSHSTKETTHYFPTKTSGVGGRHNQEGRAEGTRYSLKTAGAANSGGQRGGGILCDAEY---SGXXXXXSVSSGLAGFHGGSGKGGSSVASLLREERAFQRRTAANQGSRETEEGLPRGHADTFRSLNRHHGGSVPSLVPLNNVGLPVRLRQQ 936
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10087.119.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.66e-288 / Id = 91.41 Expect = 1.91e-286 / Id = 84.64 Sequence D8LT81_ECTSI A0A6H5KEZ1_9PHAE
Match Name E-value Identity Description
D8LT81_ECTSI 1.660e-288 91.41 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KEZ1_9PHAE 1.910e-286 84.64 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 1534 Hectar predicted targeting category other localisation Exons 6 Cds size 1530
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462506.891567-CDS-Ecto-sp13_S_contig10087:1117..1224 1681462506.891567-CDS-Ecto-sp13_S_contig10087:1117..1224 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10087 1118..1224 + 1681462506.9017544-CDS-Ecto-sp13_S_contig10087:1628..1770 1681462506.9017544-CDS-Ecto-sp13_S_contig10087:1628..1770 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10087 1629..1770 + 1681462506.9111407-CDS-Ecto-sp13_S_contig10087:2544..2742 1681462506.9111407-CDS-Ecto-sp13_S_contig10087:2544..2742 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10087 2545..2742 + 1681462506.9205415-CDS-Ecto-sp13_S_contig10087:3364..3460 1681462506.9205415-CDS-Ecto-sp13_S_contig10087:3364..3460 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10087 3365..3460 + 1681462506.9301674-CDS-Ecto-sp13_S_contig10087:4266..5117 1681462506.9301674-CDS-Ecto-sp13_S_contig10087:4266..5117 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10087 4267..5117 + 1681462506.9426546-CDS-Ecto-sp13_S_contig10087:5482..5618 1681462506.9426546-CDS-Ecto-sp13_S_contig10087:5482..5618 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10087 5483..5618 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10087.119.1
>prot_Ecto-sp13_S_contig10087.119.1 ID=prot_Ecto-sp13_S_contig10087.119.1|Name=mRNA_Ecto-sp13_S_contig10087.119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
VTALREDTLWAESLPGFIRKTLEVQKRGFGRQVALKEREIVILTEEQSEL back to top mRNA from alignment at Ecto-sp13_S_contig10087:1118..5620+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10087.119.1 ID=mRNA_Ecto-sp13_S_contig10087.119.1|Name=mRNA_Ecto-sp13_S_contig10087.119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10087:1118..5620+ (Ectocarpus species13 EcNAP12_S_4_19m)GTGACCGCGCTTCGGGAAGACACCTTGTGGGCGGAGTCTCTGCCAGGTTT
CATTCGCAAGACCTTGGAGGTTCAGAAGCGTGGCTTCGGTCGGCAGGTTG
CCCTCAA GTGAGCCGCAAGCCGAGTCAAGCCTGCTGAAAAGGCCAGATTT
TCGTGTCATGGAAGCATGCACGTTCGTACTGCTTCAGCGCATCTCACAGC
TACAGTCGCCGACATCCAGTCTCAACGTCGCGCTCGACGCTCCGGTTGAC
CCGGACGGCCTGTGATTAGAGGTCAAGCATGTTTTCCGCAGGCGCCACAC
ACAACCTTGGAGGAATGTCCGGTTCAGCCATTTTCTTCTTCCCTGCAACA
GCACATCATAACACCCCCACAGCAAGCACAACTGTAGTCGTCGACTACAT
ACAGTAGATCTTCTGGTGCGATAGATCCGAAACGCCATGTGCACGTGCGC
GATTCTGAAGTGCACCATGGTTTTCCTCCGCCCCCCCTTTTCCGTCTTTC
TCCCCGTGAAGGGAACGAGAGATTGTGATCCTCACCGAGGAGCAGAGCGA
ACTCAAGCGCGACCTGCGGAATTTCAAGGCGGACTACTTTAGCGCGGACG
CCGAAGACGTCATTCGAGCGTTAAGGAAGAGGCAGCGCGGGCTCAATGAG
CAG GTGAAACTTGATGGTCGTGTTGCATGTTCCACCGTGTCGATTATTGC
TTGATAAGGCTTGTGTGAGGTGTGTAGATCGGCCGTTCGTGAGAATACCC
TTTCTCTGCTACGAGTAAGGGTCCCTGGAGTGGTGAATAACCGTTCACCA
GCGGAAGAATTTCACCCTTTTCTTATAAATGTTGCGAGGAAGTGCCTAGC
GTGGCAGGCGTTGGTCGGCCATGCTACTTTTTATGAAAGATCAAAGTTGA
GAGTGAGCCTCAGGGCACTGTTTCAACCTCCGACAGATCACAGCAGGCGG
AGGATGTTTCTTTGTGAACATCTTCAGACCCGTGGAACATGGTTCGTCTT
GGGTCTCGTATGTGCGTCACTGCTGTACCACTGTAGGAAGATACCTTTAT
CCGGATTTCCACATAGGTAGGGGAAAAACTGGTTGCGATGTTGAAAGTAT
GCTCTTCAGCTTTGTTTATCGCTGTGCGGTGGCACCTGGCAATACAGCCA
ATCCTCTATCTGCCTATCTGCTAGGTACTTCCTAAATTGTTTGTAGTACA
TCTCCGAAGACGCGACAGTCATGAAAAGTGCGTTTGTTTCCCCTTTTTAC
GAAACGGCGAAGCTGGCATCCTTTCGTATTGCCTACGTGCTTCCGCGCCA
AAGGACTAAGCCGACGAACGGCCATCCGAAACACGCTCCGGCACTGTACT
ATTCGGTCTGCATGTCTGCCGTTTGCGTTGTGCTCCTCCGGCGACAAATG
AACCTTGTACGGTTTTTGTTGCCTCAGGTGAGGTACCTCGAGCGGCAGCT
CGAACTTGCACAGCAGTCTTCGAATGTGGAGGGCGGCGCCATCGAGGTGC
TCGAGGGGCTCCTCCGTGAGAGAGACACGGACAAGCAGCTGGTCCACGGC
TTGGGCCTCAAGAGTCTGGAAATTGGGCTCAAGATTGGGCTGCTGGAGAC
AGACGCCGGCGGCAAGACAGTGGAG GTGGGTGGACCTTTTGAGCGCCGCC
AGTGGAGGCTTGCAGGTTTCTTCGCTCCCACTGATCGTGTTGGAATGCGG
TGGAATTGACGTGAACACCTTCGTCGCGGACTAAAAAACAACTCCGCTTT
TGGCAAACCAGTGCCTAGCATGTCGATCGCGTCTATGCACACATTCTTGC
TATTCTATTTGGCGGAGATGTGAAGTACTGTCCCCCACCGTAATCTGTGA
AGTACAACGCTGCGAAACAACTGTGCTGGCAGAAACGATACGGTTCTCCC
GGCGGTTTGTAAGTAAAACTCATCAATAAGTCCTCGTTACCCTATACGCC
AATGGAACTTCGGTCTCCCTAAACTTCAGAGGGTGTCCTCGTGTATGATC
TTGAAAGAACCGGAGTCAAACAACCAGTTTCGCCAGCAGGTGGTGTCTTT
CAGCAACAGTCTAGACACAACCGCGCGCTAAAATATCAAGTATTGTCAAT
AGTAGCCGAGCAACCAGCGCAACACGATACCGCTACGACGTCCCTGTACC
CCGACCGCCCCCGTTGCCCGCTCTTCCATCACCGTCCGTAACGGTGCTCT
ATTCATGCCGGTTGGCTTTTTCTTTGGGCGACGACTCGAAACATCAGGTA
AGCCGCATGGGCCAAAAGGAGCAGCAAGCCGTGGCTCACCTCAGGGGGCG
CTTGGTAAAGGAACGGGGGATTGTCGACGCCAGAAGAAAGACG GTGAGTT
GTTTTATATATGACCCGCCGCGCCGGCATTCCGCACGGCGGTATGTAGTA
ATCGTAGCCTACAGTTTGGTTTCAGTAGCACACGCTCACGGACCAAGTGA
GCTTTCAAGCGTGCGATCCCCCACCGCCCGGCTCCTCGACAATTGGAATG
TGCGGCTGACTTTTTCACGTTTTTATATCTATCGCAGAGCACGCCGACAG
CCCGACTGAACTTGTTTCCATCTTGAAGACGAGAACGTGGAAGATATGTT
GTCGCCCGGTAACTCCTAACGCCATATGTTTCGACGTATTATGCGACCCT
CTGGTTGTTTACACAATCACGATGCAAAGCCTGCGAATAGCACCTACCCA
AAAGCGGTATATTTTAAGTTGAAAACAAGTCGACCCTACTCAAATTGGAA
AACTGTTGTGGCAAACGAATTTCGACCTGGAAAAGGGTAGCATAGCCCAC
ACCAAGAGGGCACGGTGACTAGTCTACACCTTTAGTTTGACGACATGGCG
AACGACTCGCAAGTCTTCTACTCAAAACTTCGGTCTGTGCTGTTCGAGCC
TATCCGAGGCGGCGAGCGTTTGTTGCCGTCCCCGCTCCCCCTTTCTCTTG
GCAAAGGTGACCGGCAAAGTCACAACTCAACAGCTACACGCCTTGCGTCG
AATGCGTCCGGGATCGCTTGTAATATGGGCGCCCAACATTGGCATGTTTT
TGAATCTTGGCCTTCTTGGTTTCCGGTAGCTCGCAAAAAAACTCGACCCA
CTCGACTGCCGTTGTTGTCACACCCACACGCGATCACCTGCTTATGTAGG
TAGAGGCTGAATTGGAGCGCTCTCTTCCACACGGCATGCGCGCGTTCGAG
CGAGTCAGCCGGACGATCCAACGCCTCTGCAACGGGTACACCTCTCTCCC
CGGGCTGGTCGAGTGGGGCCGCCTGACCGCCGCTCGCCTTGAGACAACGA
CAACTGCGGTGGGGGACAGACGCGGTCTCGGAGGGGATGGGAGATGGGGT
GGGAGGGTGGACGGCACCGCTATCGCTACGGCTGACCCTAGACCAGCTTA
CGGCGGCGGCGGCGGCGCAAGGCACGATCGCCGTGCGGTAAATGATCGGG
CAGCAGAAGGACAAGGACCCTGGTCAGTAGCCGGGTTGTGCGACAGCAGG
AACTTTGCGGCTCCCTCGTCCGCCCACTTTGACGGCGCTGGGTCTCTCTC
GGAGAGAGGCGTGTTTGACTTCGGCGCGCGGATATCGGCAACCACTGCCG
CATCGTCTCTCTGGTCTAGTCCCTCTACTGCCTCCACCGCGTCGCTCCCC
GGTCGACCGCGCAACGCCATGCTCCCCTCCTCGAGCCACCCCACAAAGGA
GACCACTCACTACTCCCCCAAGAAGACCAGCGGGGTGGGAGGGCGTCACA
ATCAAGAAGGTCGCGCCGAGGGCACTCGATATTCCCTCAAGACGGCGGGG
GCTGCCGACTCCGGCGGTCAAAGAGGCGGTGGGATTTTTTGTGATGCCGA
CTACGGTGGCGGCGGCGGCAGTGGCGGCGGCGGCAGCGTTTTGTCGGGCT
TGGCCGGTTTTCACAGTGGTGGTGGTAAAGGCGGCAGCAGCGTTGCAAGT
TTGCTGCGTGAGGAGAGGGCGTTCCAGCGGAGAACTTCTGCGCACCAAGG
GTGAGACGACACCGAAACGAAATATCCGCTTGACTCGGAGCACGTGCATA
GGTGTTACCTACCTTCGTTGCGACCTTAGCTTGGATCTTTGCCTCCAAGA
AAACGAAGAAGGATGTGCTGGATACAGAGGTCAAAGCGGCTGTGAAGTAT
GAAGGTAAGAAGATAACAACAAGACAACAGGTTGTTGTAGGTCAGAATCG
CGACAAAACAACCCGCGCGAGAAAGAAGGGCGGTCGCCGACATGTATCGC
ATGGCATTGCACCCTTATCAAACCGCTCGCCGTCCCTCTTCTTCTTGCAT
GCACTCCACGGTGACCACCCTCCCCCACGACCGCACGCTCACTGTACTGG
GGCTGTCTGTTTCAGATCGCGAGAAACAGAAGAGGGACTAGCTCGAGGGC
ATGCCGACACGTTCCGTTCACTAAACCGCCACCACGGAGGCAGCGTTCCT
TCGCTGGTGCCCCTGAATAACGTGGGGCTGCCGGTCCGCCTTCGTCAACA
G back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10087:1118..5620+
>mRNA_Ecto-sp13_S_contig10087.119.1 ID=mRNA_Ecto-sp13_S_contig10087.119.1|Name=mRNA_Ecto-sp13_S_contig10087.119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10087:1118..5620+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top