Homology
BLAST of mRNA_Ecto-sp13_S_contig100831.115.1 vs. uniprot
Match:
D7FS86_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS86_ECTSI)
HSP 1 Score: 72.4 bits (176), Expect = 6.520e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1
Query: 4 IGDSFGDIFRDLVGGIASVGGRGGVLNDVVDFLENQV 114
IGDSFGDIFRDLVGGIASVGG GGVLNDVVDFLENQV
Sbjct: 182 IGDSFGDIFRDLVGGIASVGGGGGVLNDVVDFLENQV 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100831.115.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.52e-14 / Id = 97.30 Sequence D7FS86_ECTSI
Match Name E-value Identity Description
D7FS86_ECTSI 6.520e-14 97.30 Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 72.8 Seed ortholog evalue 3.9e-11 Seed eggNOG ortholog 2880.D7FS86 Model size 114 KEGG ko ko:K09510,ko:K09511 Hectar predicted targeting category no signal peptide or anchor Exons 1 EggNOG free text desc. protein folding EggNOG OGs COG0484@1,KOG0714@2759 Cds size 114 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko03110
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462506.5787542-CDS-Ecto-sp13_S_contig100831:215..329 1681462506.5787542-CDS-Ecto-sp13_S_contig100831:215..329 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig100831 216..329 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100831.115.1
>prot_Ecto-sp13_S_contig100831.115.1 ID=prot_Ecto-sp13_S_contig100831.115.1|Name=mRNA_Ecto-sp13_S_contig100831.115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
SIGDSFGDIFRDLVGGIASVGGRGGVLNDVVDFLENQV back to top mRNA from alignment at Ecto-sp13_S_contig100831:216..329+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100831.115.1 ID=mRNA_Ecto-sp13_S_contig100831.115.1|Name=mRNA_Ecto-sp13_S_contig100831.115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100831:216..329+ (Ectocarpus species13 EcNAP12_S_4_19m)TCAATAGGCGATAGCTTCGGCGACATTTTCCGAGACTTGGTTGGAGGCAT
CGCGTCGGTGGGAGGGCGGGGCGGGGTGTTGAACGACGTTGTCGATTTCT
TGGAGAACCAGGTG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100831:216..329+
>mRNA_Ecto-sp13_S_contig100831.115.1 ID=mRNA_Ecto-sp13_S_contig100831.115.1|Name=mRNA_Ecto-sp13_S_contig100831.115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100831:216..329+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top