mRNA_Ecto-sp13_S_contig10081.113.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10081.113.1 vs. uniprot
Match: D8LUB2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB2_ECTSI) HSP 1 Score: 812 bits (2097), Expect = 3.640e-284 Identity = 506/572 (88.46%), Postives = 516/572 (90.21%), Query Frame = 1 Query: 259 SVGLAGASLLQLAGGAESSASSPAPAGTGQNAGNPRPSEGTTAGGGAWISGNQMRGSGLPAGADEQQPPASVQQIHAPAAAEPRTRRASFNAPPVAPIIQPVLPDLKPQHTRRSSMPAPLLPSVQSLLDDIPRGGLKRQRDEGRARQQPYDTDADSXXXXXXXXXXXXPPRGPPEDAAGFARPGPAHVVVGGPGAGKSGGREGGVDEGGRDVPLVAADGASAQGRTPNKTSTLFSGPAAXXXXXXXXXXXXDGERATRRKVWNPHQSPPSSTTGYVTSSPAMNWRRDGVATLGRAASFDEARMAARKSGMQSEDSSKPRRASAFVAHGSALPPRMIEMHRRDSAYETRTVPAGAGRVPHYSDLLSANASSRSVTAFNGRSGYSPSLTLAHPEAVIEEEAAAGAAAAGQREDGAXXXXXXXXXRPPMPGSRAAARMFHVMPATAVFAGNLPSYSRGETPSKATTXXXXXXXXXXXXXXXXXXXWSVLDPAGPAXXXXXXXXATLVAAWGAPVDEGTDEGDDAAEARTTSAVEDRGMGSRREGSGVGNVGEYQTPNRHPRRGSMMAPAAPAGRP 1974
SVGLAGASLLQLAGGAESSASSPAP GTGQNA N P EG TAGGG WISGNQMRG GLPAGADEQQPPASVQQ HAPAAAEPRTRRASFNAP VAPIIQPVLPDLK QHTRRSSMPAPLLPSVQSLLDDIP GGLKRQRDEGRARQQPYDT XXXXXXXXXXXX PPEDAAGFARPGPAHV V G A K GGREG VDE GRD VAADGASAQ RTP KT++LFSGPA XXXXXXXXXXX DGERATRRKVWNPHQSPPSSTTGYVTSSPAMNWRRDGVATLGRAASFDEAR+A RKSGMQSEDSSKPRRASAFV HGSALPPR+IEMHRRDSAYETRTVPAGAGRV HYSDLLSANASSRSVTAFNGR GYSPSLTLAHP+AVIEEEA AGAAAAGQREDGA RPPMPGSRAAARMFHVMPATAVFAG+LPSY+RGETPSKATTXXXXXXXXXXXXXXXXXXX SVLDPAGP XXXXXXXXATLVAAWGAPVDEGT++ DDAA+A TTSAVEDRGMGSRR GSGVGNVGEYQ PNRHPRRGSMM PAAPAGRP
Sbjct: 146 SVGLAGASLLQLAGGAESSASSPAPTGTGQNAANSPPPEGATAGGGPWISGNQMRGGGLPAGADEQQPPASVQQKHAPAAAEPRTRRASFNAPAVAPIIQPVLPDLKTQHTRRSSMPAPLLPSVQSLLDDIPHGGLKRQRDEGRARQQPYDTXXXXXXXXXXXXXXXX--XXPPEDAAGFARPGPAHVAVSGSAAEKRGGREGRVDESGRDASSVAADGASAQARTPKKTTSLFSGPAXXXXXXXXXXXX-DGERATRRKVWNPHQSPPSSTTGYVTSSPAMNWRRDGVATLGRAASFDEARLAERKSGMQSEDSSKPRRASAFVTHGSALPPRVIEMHRRDSAYETRTVPAGAGRVAHYSDLLSANASSRSVTAFNGRPGYSPSLTLAHPDAVIEEEAVAGAAAAGQREDGAGAGAPSGGGRPPMPGSRAAARMFHVMPATAVFAGDLPSYARGETPSKATTXXXXXXXXXXXXXXXXXXXXSVLDPAGPXXXXXXXXXATLVAAWGAPVDEGTEDKDDAADAGTTSAVEDRGMGSRRAGSGVGNVGEYQAPNRHPRRGSMMTPAAPAGRP 714
BLAST of mRNA_Ecto-sp13_S_contig10081.113.1 vs. uniprot
Match: A0A6H5JV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV53_9PHAE) HSP 1 Score: 797 bits (2058), Expect = 7.990e-276 Identity = 566/698 (81.09%), Postives = 574/698 (82.23%), Query Frame = 1 Query: 259 SVGLAGASLLQLAGGAESSASSPAPAGTGQNAGNPRPSEGTTAGGGAWISGNQMRGSGLPAGADEQQPPASVQQIHAPAAAEPRTRRASFNAPPVAPIIQPVLPDLKPQHTRRSSMPAPLLPSVQSLLDDIPRGGLKRQRDEGRARQQPYDTDADSXXXXXXXXXXXXPPRGPPEDAAGFARPGPAHVVVGGPGAGKSGGREGGVDEGGRDVPLVAADGASAQGRTPNKTSTLFSGP-AAXXXXXXXXXXXXDGERATRRKVWNPHQSPPSSTTGYVTSSPAMNWRRDGVATLGRAASFDEARMAARKSGMQSEDSSKPRRASAFVAHGSALPPRMIEMHRRDSAYETRTVPAGAGRVPHYSDLLSANASSRSVTAFNGRSGYSPSLTLAHPEAVIEEEAAAGAAAAGQREDGAXXXXXXXXXRPPMPGSRAAARMFHVMPATAVFAGNLPSYSRGETPSKATTXXXXXXXXXXXXXXXXXXXWS----VLDPAGPAXXXXXXXXATLVAAWGAPVDEGTDEGDDAAEARTTSAVEDRGMGSRREGSGVGNVGEYQTPNRHPRRGSMMAPAAPAGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFVPAWGAPANDGSGQEPTGRSAESGAAGRRGXXXXXXXXXXXXXXXXXXXXXXXXXTLSSLPQRPGLSGVAGLSEGGGPPPSAARRGS 2337
SV LAGASLLQLAGGAES WISGNQMRG GLPAGADEQQPPASVQQ HAPAAAEPRTRRASFNAPPVAPIIQPVLPDLKPQHTRRSSM APLLPSVQSLLDDIPRGGLKRQR+EGRARQQPYDTDADS XXXXXXXXX GPPED AGFARPGPAHV GPGA K GGREGGVDE GRD VAADGASAQ RTPNKTS+LFSGP AAXXXXXXXXX DGERATRRKVWNPHQSPPS TTGYVTSSPAMNWRRDGVATLGR ASFDEARM A KSGMQSEDSSKPRRASAFVAHGSALPPR+IEMHRRDSAYETRTVP GAGR PHYSDLLSANASSRSVTAFNG GYSPSL LA P+AVIEEEAAAG AGQ EDG RPP+PGSR AARMFHVMPATAVFAGNLPSYSRGETPSKATT XXXXXXXXXXXXXXXXXX VLDPAGPA AT AAWGAPVDEGT+ DDAAEA TSA EDRGMGSR GSG+GNV EYQ PNRHPRRGSMMA AAPAGRPXXXXXXXXXXXXXXXXXXXXXXXXX SAFVPAWGAPANDG QEPTGRSAESG AGRR XXXXXXXXXXXXXXXXXXXXXXXXXTLSSL QRPGLS VAG S+ GGP AAR GS
Sbjct: 172 SVWLAGASLLQLAGGAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWISGNQMRGGGLPAGADEQQPPASVQQKHAPAAAEPRTRRASFNAPPVAPIIQPVLPDLKPQHTRRSSMRAPLLPSVQSLLDDIPRGGLKRQRNEGRARQQPYDTDADSATSXXXXXXXXX--XGPPEDTAGFARPGPAHVAASGPGAEKGGGREGGVDESGRDPSSVAADGASAQARTPNKTSSLFSGPVAAXXXXXXXXXQQQDGERATRRKVWNPHQSPPSITTGYVTSSPAMNWRRDGVATLGRVASFDEARMVAIKSGMQSEDSSKPRRASAFVAHGSALPPRVIEMHRRDSAYETRTVPGGAGREPHYSDLLSANASSRSVTAFNGCPGYSPSLMLAQPDAVIEEEAAAGXXXAGQSEDGVGAGAPSGGRRPPVPGSRLAARMFHVMPATAVFAGNLPSYSRGETPSKATTAXXXXXXXXXXXXXXXXXXXXXXXXVLDPAGPAAKEGGGASATFAAAWGAPVDEGTEGKDDAAEAGKTSAAEDRGMGSRPAGSGIGNVVEYQAPNRHPRRGSMMAQAAPAGRPXXXXXXXXXXXXXXXXXXXXXXXXX------SAFVPAWGAPANDGPRQEPTGRSAESGVAGRRDXXXXXXXXXXXXXXXXXXXXXXXXXTLSSLAQRPGLSRVAGSSDEGGPXXPAARCGS 861 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10081.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10081.113.1 >prot_Ecto-sp13_S_contig10081.113.1 ID=prot_Ecto-sp13_S_contig10081.113.1|Name=mRNA_Ecto-sp13_S_contig10081.113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=779bp QGQKSQFCSAHKQEGQVDVCNRRCQHPGCSKRPCFGLPGQRPCFCGSHRSback to top mRNA from alignment at Ecto-sp13_S_contig10081:2907..5894- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10081.113.1 ID=mRNA_Ecto-sp13_S_contig10081.113.1|Name=mRNA_Ecto-sp13_S_contig10081.113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10081:2907..5894- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10081:2907..5894- >mRNA_Ecto-sp13_S_contig10081.113.1 ID=mRNA_Ecto-sp13_S_contig10081.113.1|Name=mRNA_Ecto-sp13_S_contig10081.113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2337bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10081:2907..5894- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |