mRNA_Ecto-sp13_S_contig100807.112.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: D8LGI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI8_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.570e-42 Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 1 Query: 1 TNTVLVCAYCTH-VARFWQERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAAPXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
T V VC + +ERKRNAQRKINEVDAELLALTNVNVHR+FAISDSVSATNHDRRYTGTADPQ+ESVYAAPXXXXXXXXXXXXXXPP+YHDFVGGVTQVHIQ
Sbjct: 104 TAIVFVCTXXXXXLPELMKERKRNAQRKINEVDAELLALTNVNVHRNFAISDSVSATNHDRRYTGTADPQMESVYAAPXXXXXXXXXXXXXXPPNYHDFVGGVTQVHIQ 212
BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: A0A6H5KZI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI7_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.800e-38 Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 1 Query: 52 QERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAAPXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
+ER+RNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQ+ES YAAPXXXXXXXXXXXXXX HDFVGGVTQVHIQ
Sbjct: 48 EERERNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQMESAYAAPXXXXXXXXXXXXXXXXXXHDFVGGVTQVHIQ 138
BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: A0A6H5JSH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSH8_9PHAE) HSP 1 Score: 139 bits (351), Expect = 3.660e-36 Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1 Query: 52 QERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAAPXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
+ER+RNAQRKINEVDAELL LTNVNVHRSFAISDSVSATNHDRR TGT DPQ+ESVYAAPXXXXXXXXXX PP+YHDFVGGVTQVHIQ
Sbjct: 1702 EERERNAQRKINEVDAELLTLTNVNVHRSFAISDSVSATNHDRRCTGTVDPQMESVYAAPXXXXXXXXXXRSAAPPNYHDFVGGVTQVHIQ 1792
BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: D7FX07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX07_ECTSI) HSP 1 Score: 110 bits (275), Expect = 3.830e-27 Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1 Query: 10 VLVCAYCTHVARFWQERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAA-------------PXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
VL C C + +E+KRNAQRKIN VDAELLALTNVNV R+FAISDSVSATN D R+TGTADP +ESVYAA XXXXXXXX PP YH+++ V QVH+Q
Sbjct: 193 VLTCCSCC-LPELMKEKKRNAQRKINVVDAELLALTNVNVRRNFAISDSVSATNEDHRFTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSSVKQVHVQ 309 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100807.112.1 >prot_Ecto-sp13_S_contig100807.112.1 ID=prot_Ecto-sp13_S_contig100807.112.1|Name=mRNA_Ecto-sp13_S_contig100807.112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp TNTVLVCAYCTHVARFWQERKRNAQRKINEVDAELLALTNVNVHRSFAISback to top mRNA from alignment at Ecto-sp13_S_contig100807:113..439- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100807.112.1 ID=mRNA_Ecto-sp13_S_contig100807.112.1|Name=mRNA_Ecto-sp13_S_contig100807.112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100807:113..439- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100807:113..439- >mRNA_Ecto-sp13_S_contig100807.112.1 ID=mRNA_Ecto-sp13_S_contig100807.112.1|Name=mRNA_Ecto-sp13_S_contig100807.112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100807:113..439- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |