mRNA_Ecto-sp13_S_contig10080.111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A6H5KBR7_9PHAE (GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR7_9PHAE) HSP 1 Score: 416 bits (1070), Expect = 5.240e-143 Identity = 216/234 (92.31%), Postives = 220/234 (94.02%), Query Frame = 1 Query: 1 MFCSQRFVVVVGLLAALLVFAGVTLQGTWNVERSLSFTSV----ASHPTASGSSAFGDGKEEIGEINSSSQHRGLFDRGARDGGGERRARLAFLIMSSGDDIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGELMTGFEKRWQ 690 MFCSQR VVVVGLLAALLVFA V LQG+WNVER+LS TSV ASH TASGSSAFGDGK+EI E NSSSQHRGLFDRGARDG GERRARLAFLIMSSGDDIAKLSVLLPEIYHP+NIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHAD GVSFMDGE MTGFEKRWQ Sbjct: 1 MFCSQRLVVVVGLLAALLVFAEVALQGSWNVERNLSVTSVDRSIASHTTASGSSAFGDGKKEIAEFNSSSQHRGLFDRGARDGRGERRARLAFLIMSSGDDIAKLSVLLPEIYHPDNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADAGVSFMDGEPMTGFEKRWQ 234
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: D8LDZ1_ECTSI (Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ1_ECTSI) HSP 1 Score: 350 bits (898), Expect = 3.680e-116 Identity = 172/180 (95.56%), Postives = 177/180 (98.33%), Query Frame = 1 Query: 151 AFGDGKEEIGEINSSSQHRGLFDRGARDGGGERRARLAFLIMSSGDDIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGELMTGFEKRWQ 690 AFGDGK+EIGE+NSSSQHRGLFD+GARDG GERRARLAFLIMSSGDDIAKLSVLLPEIYHP+NIYLVHVDAKAPREQTEKIREVVRANFPAADGRP NG+LLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHAD GVSFMDGELMTGFEKRWQ Sbjct: 115 AFGDGKKEIGEVNSSSQHRGLFDQGARDGRGERRARLAFLIMSSGDDIAKLSVLLPEIYHPDNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPPNGRLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADAGVSFMDGELMTGFEKRWQ 294
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE) HSP 1 Score: 126 bits (317), Expect = 6.000e-30 Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1 Query: 244 ERRARLAFLIMSSG-DDIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGE 660 E+RAR+ +LIMSSG +++ K LL IY PNN YLVH+D K + +R +F N ++LEPA VSWGG++ITL ++GI + W++ WD+FINLS SDFP++ Q E+T LG++AD G++F+ GE Sbjct: 171 EKRARIGYLIMSSGTEELHKTKRLLKAIYDPNNFYLVHLD--------RKDKHSIRRDFENFIEEWDNVRMLEPALDVSWGGYTITLTAIFGICTMVQWNDEWDFFINLSASDFPLLPQSELTTVLGKYADVGMNFVSGE 302
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE) HSP 1 Score: 112 bits (279), Expect = 5.640e-25 Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 241 GERRARLAFLIMSSGD-DIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGELM 666 G R AR AFLIM+ G D+ L +P +Y P N +L+H+D K+ + +RE++ N ++LEPA VSWGG+SITL L+G++ + W WDYFINLS +DFP+++ EM++ +G ++ ++F+ G M Sbjct: 124 GTRPARFAFLIMAHGPADVELLRRNVPWLYSPLNFFLIHMDRKSSDKDRADVRELLHGL--------DNARILEPAQSVSWGGYSITLTALFGLSTLVEWSRDWDYFINLSATDFPLLSSAEMSVAMGSFVESRMNFVTGSAM 258
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A835YZY2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY2_9STRA) HSP 1 Score: 102 bits (253), Expect = 8.260e-22 Identity = 59/135 (43.70%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 253 ARLAFLIMSSGD-DIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHA-DTGVSFM 651 A++ F I SG D LS LL ++H +N+YL+HVDAKA IR V++ A P N KL++ VSWG FS+ L L+G+++A+ W WD++INLS +D P++T DEM L LG + D VSFM Sbjct: 42 AKILFSITISGSRDALALSTLLRALWHQDNLYLLHVDAKALASDMAAIRNVIKQ---VAGADPKNIKLVDNPVQVSWGRFSMLLTALHGLSSAIGWSSQWDFWINLSPADMPLLTADEMRLVLGALSRDRPVSFM 173
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.600e-21 Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 1 Query: 247 RRARLAFLIMSSG-DDIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGELMTGFEKRWQ 690 ++AR+ F IM + ++ L LL +YH ++ +LVH+D KA + + + N + ++PA V+WGGF++TL +YG+ AL W+ WDYFINLS SD P++ DE+ LGEH SF+ G +E W+ Sbjct: 85 QKARVVFYIMVANLQELPGLDALLRTLYHVDHFFLVHLDVKASALARQGVESGIERMLDERGNGERNVRFVDPAMPVTWGGFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLLRADEIAGILGEHKAGNTSFITG---FKYEPSWE 230
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 6.990e-19 Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 289 DIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGELMTGFEKRWQ 690 ++ L LL +YH ++ +LVH+D KA + + + + N + + PA ++WGGF++TL +YG+ AL W+ WDYFINLS SD P++ +DE+ LGEH SF+ G +E W+ Sbjct: 7 ELPGLDALLRTLYHVDHFFLVHLDVKASAQARQGVESRIERVLDERGNGERNVRFVSPAMPITWGGFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLL-KDEIAGILGEHKAGNTSFITG---FKYEPSWE 136
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A835Z5M7_9STRA (Protein xylosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 3.800e-18 Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 1 Query: 247 RRARLAFLIMSSGD-DIAKLSVLLPEIYHPNNIYLVHVDAKAP---REQTEKIRE---VVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEMTLFLGEHADTGVSFMDGE 660 R AR+A+ I +GD + L LL +YHP+N+Y +HVD+KA R Q E + + V R A G PSN ++ V+WGG S+ L +Y +A A+ E WDY++N+S SD P++ Q E+ L E A G+SF+ G+ Sbjct: 45 REARIAYAITVAGDGEYHGLKRLLKYLYHPDNLYYIHVDSKATAMTRLQIEHLLKETWVKRPRTGAQVGLPSNLVMVGNPVSVAWGGLSLLLTSVYLMAVAVDSGERWDYWVNVSPSDMPMLPQSEIMELLAEPARRGMSFISGQ 189
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A0Q3JP57_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3JP57_BRADI) HSP 1 Score: 88.2 bits (217), Expect = 1.700e-16 Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 256 RLAFLIMSSGDDIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEG------WDYFINLSTSDFPVVTQDE-MTLFLGEHADTGVSFMD 654 R A+LI S D A L +L +YHP N Y++H+DA+AP + V ++ A R N +++E A +V++ G ++ L+ AAA LW EG WD+F+NLS SD+P+VTQD+ M +F G G+SF+D Sbjct: 115 RFAYLISGSAGDAAMLRRVLLALYHPRNHYILHLDAQAPDSDRAGLAAFVASHRVLAAAR--NVRVVEKANLVTYRGPTMVTTTLHA-AAAFLWGEGRGKGADWDWFVNLSASDYPLVTQDDLMDVFSG--LPRGLSFID 249
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Match: A0A5A7R3H8_STRAF (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (Fragment) n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R3H8_STRAF) HSP 1 Score: 86.3 bits (212), Expect = 4.130e-16 Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 250 RARLAFLIMSSGDDIAKLSVLLPEIYHPNNIYLVHVDAKAPREQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVTQDEM 606 +A A+LI +S D +L LL +YHP N YLVHVDA AP + +I + V + A R N ++ +V++ G ++ A L+GIAA L WD+F+NLS +D+P+VTQD++ Sbjct: 24 KATFAYLISASSGDTVRLKRLLLALYHPANYYLVHVDAAAPEAEHREISKFVSNHSVFA--RVGNVWVVGKPSLVTYRGPTMLAATLHGIAALLRLAGDWDWFVNLSAADYPLVTQDDL 140 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10080.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10080.111.1 >prot_Ecto-sp13_S_contig10080.111.1 ID=prot_Ecto-sp13_S_contig10080.111.1|Name=mRNA_Ecto-sp13_S_contig10080.111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp MFCSQRFVVVVGLLAALLVFAGVTLQGTWNVERSLSFTSVASHPTASGSSback to top mRNA from alignment at Ecto-sp13_S_contig10080:3814..5677+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10080.111.1 ID=mRNA_Ecto-sp13_S_contig10080.111.1|Name=mRNA_Ecto-sp13_S_contig10080.111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10080:3814..5677+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10080:3814..5677+ >mRNA_Ecto-sp13_S_contig10080.111.1 ID=mRNA_Ecto-sp13_S_contig10080.111.1|Name=mRNA_Ecto-sp13_S_contig10080.111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10080:3814..5677+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |