mRNA_Ecto-sp13_S_contig10077.106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5L3M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M5_9PHAE) HSP 1 Score: 325 bits (833), Expect = 3.180e-103 Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 1 Query: 1 EQSLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILGAV 501
+Q+LCLDAF+AVLNHQSC EG++RWYTSIRELQLVSLKFCGVCRSTSILRVRV+H APPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKV DLRYWA+ ELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILG V
Sbjct: 99 KQNLCLDAFVAVLNHQSCVEGKKRWYTSIRELQLVSLKFCGVCRSTSILRVRVEHNAPPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVCDLRYWAKAELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILGVV 265
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.310e-32 Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 1 Query: 7 SLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYA---LPDAW--NRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEA-KLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILG 495
S CLDAF+ LN Q+CD ++RWY S ELQLVSL+ CG CR L VRV + PPSLW P+++ + P +RVP V+A+G TW++P+ L + + + R + A L S VWPQ LK++ F+ D V ASWPASLQ L+FGC FNQ I+G
Sbjct: 7 SKCLDAFVVALN-QACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVG 174
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 120 bits (300), Expect = 8.590e-26 Identity = 73/174 (41.95%), Postives = 99/174 (56.90%), Query Frame = 1 Query: 4 QSLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSY--------ALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEAKLAS--VVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILG 495
+S CLDAF+ L Q+ D +RWY S ELQLVSL+FCG CRS V++ + P SLWSP KS +P +RVPAV+A GW W++P++ LL R Q +R+ + P + + + W Q L +L F + +V SWPA LQ L+FG FNQPI+G
Sbjct: 26 RSECLDAFIVALK-QAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIP---SRVPAVQANGWMWALPMEILLP-RSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPIIG 194
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 110 bits (275), Expect = 9.370e-24 Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 1 Query: 13 CLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEA-KLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQ 483
C+DAF+ LN ++CD G++RWY S ELQ VSL+FC CR RV H S L +R P VRAY TW++ +D LL+ + ++ R G A LAS++W Q LK+L +LDT V ASWPASLQ L+FG FN+
Sbjct: 19 CVDAFIVALN-RTCDGGEQRWYASTLELQPVSLEFCVACR-----RVPTSHST---------STVGRLVSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5JSE5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE5_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.080e-11 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 4 QSLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPDAWNRVPAVRAY 255
+S CLDAF+ +N Q+ D +++WY S ELQLVSL FCG CRS +L + VD PPSLW P KS Y P+ R+ A R +
Sbjct: 972 KSKCLDAFIVTMN-QAADGRKQQWYASTLELQLVSLAFCGACRSAKMLHLHVDRGKPPSLWFPHKS--YTTPN--KRIAASRVW 1050
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5JTV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV8_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 8.100e-9 Identity = 53/138 (38.41%), Postives = 66/138 (47.83%), Query Frame = 1 Query: 16 LDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPD--------AWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEAKLASVVWPQGLKQLEF 405
LDAF VLN G W S EL+LVS + C CRS S L +RV P LW+ + A P + VP R TW +P TL R +A E GSF + + +SVVWP+GLK+LEF
Sbjct: 31 LDAFTVVLNQNH--SGGAGWLASTSELRLVSFQSCVECRSLSRLALRVSSDTPERLWAAGYAIENAPPSDRAHETVSSAANVPPFRVVKATWLLP--TLALKRTGPAFAGLEELSLGSF-KFRSSSVVWPRGLKKLEF 163
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5J7K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K7_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 3.070e-6 Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 1 Query: 229 NRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQT-ELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPI 489
+RVP V+A+G +P + LL+ + + + +G A L S+ W + L L +LDT K SW ASLQ L+FG FNQP+
Sbjct: 2 SRVPGVQAFGLLLGLPTEVLLQSSAIELGSGSGHQHMKGHASAASLGSMSWLKKLNWLVLELDTPANKTSWAASLQQLSFGDCFNQPL 89 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10077.106.1 >prot_Ecto-sp13_S_contig10077.106.1 ID=prot_Ecto-sp13_S_contig10077.106.1|Name=mRNA_Ecto-sp13_S_contig10077.106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=417bp MAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPback to top mRNA from alignment at Ecto-sp13_S_contig10077:2980..4257- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10077.106.1 ID=mRNA_Ecto-sp13_S_contig10077.106.1|Name=mRNA_Ecto-sp13_S_contig10077.106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10077:2980..4257- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10077:2980..4257- >mRNA_Ecto-sp13_S_contig10077.106.1 ID=mRNA_Ecto-sp13_S_contig10077.106.1|Name=mRNA_Ecto-sp13_S_contig10077.106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10077:2980..4257- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |