Homology
BLAST of mRNA_Ecto-sp13_S_contig10074.102.1 vs. uniprot
Match:
A0A6H5L876_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L876_9PHAE)
HSP 1 Score: 197 bits (502), Expect = 2.290e-55
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 3
Query: 246 SNSLVMVVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGFVSNATYRAVDAN 530
SNSLVM+VPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNG VSNATYRAVDAN
Sbjct: 1095 SNSLVMLVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDAN 1189
BLAST of mRNA_Ecto-sp13_S_contig10074.102.1 vs. uniprot
Match:
D7G7M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M7_ECTSI)
HSP 1 Score: 118 bits (296), Expect = 1.110e-31
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 3
Query: 261 MVVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGR-VC 431
MVVPCQDAA+EPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYN VC
Sbjct: 1 MVVPCQDAAMEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNAMAVC 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10074.102.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.29e-55 / Id = 97.89 Expect = 1.11e-31 / Id = 93.10 Sequence A0A6H5L876_9PHAE D7G7M7_ECTSI
Match Name E-value Identity Description
A0A6H5L876_9PHAE 2.290e-55 97.89 Integrase catalytic domain-containing protein n=1 ... [more] D7G7M7_ECTSI 1.110e-31 93.10 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 535 Hectar predicted targeting category signal peptide Exons 4 Cds size 531
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462505.6178381-CDS-Ecto-sp13_S_contig10074:730..977 1681462505.6178381-CDS-Ecto-sp13_S_contig10074:730..977 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10074 731..977 + 1681462505.6263213-CDS-Ecto-sp13_S_contig10074:1240..1297 1681462505.6263213-CDS-Ecto-sp13_S_contig10074:1240..1297 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10074 1241..1297 + 1681462505.6341095-CDS-Ecto-sp13_S_contig10074:2168..2284 1681462505.6341095-CDS-Ecto-sp13_S_contig10074:2168..2284 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10074 2169..2284 + 1681462505.6465619-CDS-Ecto-sp13_S_contig10074:2917..3028 1681462505.6465619-CDS-Ecto-sp13_S_contig10074:2917..3028 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10074 2918..3028 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10074.102.1
>prot_Ecto-sp13_S_contig10074.102.1 ID=prot_Ecto-sp13_S_contig10074.102.1|Name=mRNA_Ecto-sp13_S_contig10074.102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
VYFTAGWGVFLCVTNRSYGVTVDGAIGSAIGSTEVSARKQATHFAVRSEM back to top mRNA from alignment at Ecto-sp13_S_contig10074:731..3030+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10074.102.1 ID=mRNA_Ecto-sp13_S_contig10074.102.1|Name=mRNA_Ecto-sp13_S_contig10074.102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10074:731..3030+ (Ectocarpus species13 EcNAP12_S_4_19m)GTATATTTTACAGCTGGTTGGGGTGTTTTTTTGTGTGTTACCAACCGCTC
CTACGGGGTGACCGTTGACGGCGCCATTGGCAGCGCCATTGGCAGCACTG
AAGTATCAGCGAGGAAACAAGCAACACATTTTGCTGTTCGGAGTGAAATG
GTGGAGAAACGCCTTTGGAGTACAATTTACAGCACCAACCGTATGGTTCG
TTCCGCATCCGCACAAGAGGTGCACAAAACGGCAAGCTCGCACGGAG GTG
CGTAGAAGAAGGGGTAAAGGCGGCGATGTTCGATGCGCGCTGCCGCGCAC
CATGCCTCGCGCGCGGACGGAGAGTTGGCGTTGACGTGAGAAAAAATGCC
GAGAACGAAATGTTTTTTATTAACGACCGATTCTCCCCATGCGAAGGGTT
GTCTCAGTCAGTCACGACATACGCTTGTTTCGCATCTTGCCATCTCCTTT
TGGCGGGTGGGTGATGTGATGCGACTCTCTGTGCTCGGCTCGGCCGCGCG
TCTGGTGCAGCAATTCGCTGGTCATGGTGGTGCCCTGTCAGGATGCTGCC
GTGGAGCCGGGAACTAC GTAAGTTTGGTTTTGAGAAAGCTGTTCCTTCAG
GTTTCCTTCTTTTCTTCTCTCGTGTTCAAGGGTCCTTATCGATGTGTTGT
TCTCGTCCACCTCCACTCCGCCGTCTGTGCCCATCGTGTGTAGGTGTCAC
GAGGTACCATACCCAGCTACCCCTGCAAATCAACCGTGCAGACCTGCGGC
TCACGATCATATCAAGCGAAAGGGCGAAAACGTTCTCCACCTACCACCCT
ACAGAGTTCCTCATCGAATGCCACTTGCTTTTACGCGCACATGTCAGTAT
CGTATCTCGTGCCACCCACGGCGGCCGCCTGCCTAAGCACTAATAAGCTG
AATGTAGCTCCGATCTCGCTAGGCACAATTTCGCTCCTTTCGTGTTTTGG
TTAGAATCGTCGCGCCGTTGTCGCTACCACTCCCAGATTTGTGCCTAACC
GGCAGTCTTTGTTCCTTCTCTCCACTGAGCTCTTCCGCTGCGGTAAATGT
CGTTTGTCCTTGACGACGTCACGGCAACTCGCCACGTACATATCGTACTG
CGTTTGTTGAGCACCCCAAGACATCACGAAACGAATGGGGTCACAGGAGC
AATGGGATTTCTGAGCCGTGGGAACACGGAGTGTTTTTCGTCGCCCCCTC
CCTCTCCGATGCGTGAAACGACCGTTCGGTGTTACGTTCCTTGAAACGAC
ACCACGAAGGGAACCTGCGTGCAAGAGCTTTTTCTTTCACGTCGATGATT
TTTCCCTGTTTTCTTCCGTTTTGGCTGTGTTTGACTTCCTGGGGAAAATG
TTTGTCGCCCCGTGCTATTTCCTTTTTGTTGCATGTTCTGTTCACACGTG
TTTTCATGTTTGCTCTCGTGCGCTTGTACTATGTTTAGGATGTTGGACTG
GCGCTTCGGTAGCGCCCCGGACGAAACCAAGCTTGGCTACAGTATGCAGT
TCTTCCCGGAGCAGGAGGATTGTGGGGAGACCAGCGTGGAGTGGAACTAC
AACG GTGAGAGCTATCAAAGTGTAACTCTTGTACATGTTTTGCACTGCTT
CAGGATGCTGGGTATTCATGAGTGTTGTGGGCTGTGTCACCAGACACGAC
ACGTGCCAGCAAACGCACGAACATTACCGTGCGAGAGAGCGAGAGAGGCA
GGCGTTTTGCCAGTCTGCCTTTGGCCCAGACAGTTCAACATAGAATAAAA
CAAGGAAAGACGCCAGTGCGGAATGAAAAAAGCTAGAGTGCTTGTTGTCT
GCGGTTTCAGAAGACAGGTATGTCCGTTGTGTATGGGAGTACGAATTGGC
GTCGAATGCTGATCGTTTTGGTAGTCCATTGACGTGCATCGGTCACCATG
TCGCAAAACGGATCACAAGCATTACCGTGCCTGTGGATTTGGTGAGCCTC
GTGAAGACCCCCCGCGGAGCACTGACCATCTGACCGACGGAGATACACCT
AACTTTTGACTTGTGCGGCGGTATGACCAGCCGTCCCGCAGACCTCGCAT
GCATTGTGGCAGTACCTTTTTTTTTTCCATTTAGGGAGCTCCCGATCACC
ATCCTTGTCGCCACAACGAGAATTTATCTCAAACAATGCCACTCACCTAC
CATTGCTCCCAACCGTTACCTTTCGGGCCCTATCTAGGCCGAGTGTGTCG
GGGAGACTTCAGCCATGCAGCCGCGGTGTTGTCGCTATCGTTCCGGGACG
ACAATGGTTTTGTCAGCAACGCCACCTACCGGGCCGTGGATGCTAACA back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10074:731..3030+
>mRNA_Ecto-sp13_S_contig10074.102.1 ID=mRNA_Ecto-sp13_S_contig10074.102.1|Name=mRNA_Ecto-sp13_S_contig10074.102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10074:731..3030+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top