mRNA_Ecto-sp13_S_contig10073.101.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: D8LQ20_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ20_ECTSI) HSP 1 Score: 263 bits (672), Expect = 2.720e-87 Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHAR+SAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARVSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 133
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A7S2XZ80_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ80_9STRA) HSP 1 Score: 223 bits (569), Expect = 1.230e-71 Identity = 108/133 (81.20%), Postives = 123/133 (92.48%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILA DGI+MAAER+ VSKLLAP+KTSEKTYR+ ++ + VVAGLTADAN+L+ AR+++QRYLYQY E MP+EQL++ VCNYKQAYTQFGGLRPFGVS Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILATDGIVMAAERRTVSKLLAPAKTSEKTYRIDDHVAAVVAGLTADANILIQEARVASQRYLYQYQEPMPVEQLIERVCNYKQAYTQFGGLRPFGVS 133
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A836CL31_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL31_9STRA) HSP 1 Score: 223 bits (569), Expect = 1.270e-71 Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKD-GIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILA D GI++AAERK VSKLLAPSKTSEKTY+L + SCVVAGLTADAN+L+N ARL+AQRYLYQY E MP+EQLV+ VCN KQAYTQFGGLRPFGV+ Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAGDNGIVLAAERKTVSKLLAPSKTSEKTYKLDDATSCVVAGLTADANILINQARLAAQRYLYQYQEAMPVEQLVQRVCNMKQAYTQFGGLRPFGVA 134
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A6V1N066_HETAK (Proteasome subunit alpha type n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N066_HETAK) HSP 1 Score: 220 bits (561), Expect = 2.020e-70 Identity = 106/133 (79.70%), Postives = 122/133 (91.73%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 M+RRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVG+LAKDGI+MAAER+ VSKLLAP+KTSEK YR+ ++ S VVAGLT+DAN+L+ ARL++QRYLY YG MPLEQLV+ VCNYKQAYTQ+GGLRPFGV+ Sbjct: 1 MSRRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGLLAKDGIVMAAERRTVSKLLAPAKTSEKVYRIDDHVSAVVAGLTSDANILLQQARLASQRYLYSYGAPMPLEQLVQRVCNYKQAYTQYGGLRPFGVA 133
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: W7TS52_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS52_9STRA) HSP 1 Score: 215 bits (547), Expect = 5.460e-69 Identity = 104/133 (78.20%), Postives = 120/133 (90.23%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL DGI++AAERK SKLLAPSK+S+K Y++ + + VVAGLT+DAN+L+N ARLSAQRYLYQY E MP+EQLV+ +C+YKQAYTQ+GGLRPFGVS Sbjct: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVS 165
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A7S1YQT7_9STRA (Proteasome subunit alpha type n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S1YQT7_9STRA) HSP 1 Score: 218 bits (555), Expect = 7.220e-69 Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDG++MA+ER+V S LLAP+KTSEKTY+L +A+C VAGLTADAN+L++ ARL A RY YQY E +P+EQLV+ VCNYKQAYTQ+GGLRPFGV+ Sbjct: 25 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGVVMASERRVTSGLLAPAKTSEKTYKLCSHAACTVAGLTADANILIDEARLRAGRYEYQYQEHIPIEQLVEHVCNYKQAYTQYGGLRPFGVA 157
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A4D9DEG4_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEG4_9STRA) HSP 1 Score: 215 bits (547), Expect = 3.060e-68 Identity = 104/133 (78.20%), Postives = 120/133 (90.23%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL DGI++AAERK SKLLAPSK+S+K Y++ + + VVAGLT+DAN+L+N ARLSAQRYLYQY E MP+EQLV+ +C+YKQAYTQ+GGLRPFGVS Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVS 133
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A7S3PYZ9_9STRA (Proteasome subunit alpha type n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYZ9_9STRA) HSP 1 Score: 216 bits (549), Expect = 3.500e-68 Identity = 104/133 (78.20%), Postives = 122/133 (91.73%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILA+DG++MA+E+K+ S LLAPSKTSEKTY+L ++A+C VAGLTADAN+L++ ARL A RY YQY E +P+EQLV+ VCNYKQAYTQ+GGLRPFGV+ Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILARDGVVMASEKKLTSGLLAPSKTSEKTYKLCQHAACNVAGLTADANILIDQARLRAGRYEYQYVEPIPMEQLVEHVCNYKQAYTQYGGLRPFGVA 133
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A7S1ZZL2_TRICV (Proteasome subunit alpha type (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZL2_TRICV) HSP 1 Score: 212 bits (539), Expect = 6.300e-68 Identity = 101/133 (75.94%), Postives = 119/133 (89.47%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVG+LA+DGI+MA E++V S LLAP KTSEK Y+L ++++C VAGLTADAN+L++ ARL A RY YQY E +P+EQLV+ VCNYKQAYTQ+GGLRPFGV+ Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGVLARDGIVMACEKRVTSGLLAPPKTSEKIYKLCDHSACTVAGLTADANILIDQARLRAGRYQYQYQESIPVEQLVEHVCNYKQAYTQYGGLRPFGVA 133
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Match: A0A7S1UNW8_9STRA (Proteasome subunit alpha type n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNW8_9STRA) HSP 1 Score: 214 bits (545), Expect = 1.040e-67 Identity = 103/133 (77.44%), Postives = 121/133 (90.98%), Query Frame = 1 Query: 4 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARLSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVS 402 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGI+MA+ER++ S LLAP+KTSEKTY+L +++C VAGLTADAN+L++ ARL A RY YQY E +P+EQLV+ VCNYKQ+YTQ+GGLRPFGV+ Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIVMASERRITSGLLAPAKTSEKTYKLCNHSACNVAGLTADANILIDQARLRAGRYQYQYQEPIPVEQLVEHVCNYKQSYTQYGGLRPFGVA 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10073.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10073.101.1 >prot_Ecto-sp13_S_contig10073.101.1 ID=prot_Ecto-sp13_S_contig10073.101.1|Name=mRNA_Ecto-sp13_S_contig10073.101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKback to top mRNA from alignment at Ecto-sp13_S_contig10073:3508..6023+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10073.101.1 ID=mRNA_Ecto-sp13_S_contig10073.101.1|Name=mRNA_Ecto-sp13_S_contig10073.101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:3508..6023+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10073:3508..6023+ >mRNA_Ecto-sp13_S_contig10073.101.1 ID=mRNA_Ecto-sp13_S_contig10073.101.1|Name=mRNA_Ecto-sp13_S_contig10073.101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:3508..6023+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |