mRNA_Ecto-sp13_S_contig10073.100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10073.100.1 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE) HSP 1 Score: 400 bits (1027), Expect = 6.450e-134 Identity = 249/359 (69.36%), Postives = 257/359 (71.59%), Query Frame = 1 Query: 1 MCRKRSMEISRWLIFVVISASSIASGEQPPASPPSQHGIRIDSRARPPXXXXXXXXXXXXXXXXXXISPSPWSFPPRQQRHSTVLSTREGGCAGSASAPAGAFLEHYSPAAAXXXXXXXXXXAATRVPVLQQLPSKAANATRTLLPLAPFVVEVPALAAHARAAWPWARSAMTAAVAVAFSRRPFAFVLPPTQPRPYRRWKQXXXXXXXXXPRAIARIHQEREEQQACCGPSRLGRRGFFSISSSGSGSGSDGGSSTNDRSALHPSNRSPSCCRDVDVATSSFTRRGAIEKTLVSAARWWAVVAAGSSVAFADADVGATRVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEAS 1077
MC KRS E+SRWLIF VISASSIASGEQP ASPPS HGIRIDSRARPP ISPSPWS PPRQQR+STVLSTRE G GSASAPA AFLEH+SP+AA XXXXXXXXXAA RVPVLQ LPSKAAN TR LLPLAPFVVEVPALAAHARAA PWARSAMTAAVA AFSRRPFA RGF +S G GSSTNDRSAL P++RSPSCCRDVDVAT S TRRGAIE+TLVSAARWWAV AAGSS AFADADVGAT VGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEAS
Sbjct: 1 MCWKRSTEVSRWLIFAVISASSIASGEQPLASPPSHHGIRIDSRARPPPSPDDTAATLTTSSSPAPISPSPWSSPPRQQRYSTVLSTREDGRVGSASAPA-AFLEHFSPSAAAXXXXXXXXXAAARVPVLQHLPSKAANVTRNLLPLAPFVVEVPALAAHARAARPWARSAMTAAVAAAFSRRPFA--------------------------------------------------RGFICLSGGGXXXXXXXGSSTNDRSALDPNSRSPSCCRDVDVATPSLTRRGAIEETLVSAARWWAVAAAGSSGAFADADVGATGVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEAS 308
BLAST of mRNA_Ecto-sp13_S_contig10073.100.1 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI) HSP 1 Score: 108 bits (269), Expect = 7.880e-24 Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 Query: 889 ARWWAVVAAGSSVAFADADVGATRVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLE 1071
ARWWAV AA SS AFAD DVGAT VGDQLSSKALTKESYDGFAEGYD+LDGGWAASAIGLE
Sbjct: 2 ARWWAVAAAASSGAFADTDVGATGVGDQLSSKALTKESYDGFAEGYDNLDGGWAASAIGLE 62 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10073.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10073.100.1 >prot_Ecto-sp13_S_contig10073.100.1 ID=prot_Ecto-sp13_S_contig10073.100.1|Name=mRNA_Ecto-sp13_S_contig10073.100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp MCRKRSMEISRWLIFVVISASSIASGEQPPASPPSQHGIRIDSRARPPPSback to top mRNA from alignment at Ecto-sp13_S_contig10073:1226..2720- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10073.100.1 ID=mRNA_Ecto-sp13_S_contig10073.100.1|Name=mRNA_Ecto-sp13_S_contig10073.100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:1226..2720- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10073:1226..2720- >mRNA_Ecto-sp13_S_contig10073.100.1 ID=mRNA_Ecto-sp13_S_contig10073.100.1|Name=mRNA_Ecto-sp13_S_contig10073.100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:1226..2720- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |