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Homology
BLAST of mRNA_Ecto-sp13_S_contig100701.97.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 4.790e-15 Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 Query: 1 RRSRLLLPAPPVGRHEAALVWKLFRLARDSTALRVHR 111
RRSRLLLPAPPVGRHEAALVWKLFRLARD+TALRVHR
Sbjct: 338 RRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHR 374
BLAST of mRNA_Ecto-sp13_S_contig100701.97.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.790e-15 Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 Query: 1 RRSRLLLPAPPVGRHEAALVWKLFRLARDSTALRVHR 111
RRSRLLLPAPPVGRHEAALVWKLFRLARD+TALRVHR
Sbjct: 236 RRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHR 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100701.97.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| D8LMA8_ECTSI | 4.790e-15 | 97.30 | Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... | [more] |
| A0A6H5K372_9PHAE | 4.790e-15 | 97.30 | Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 0 |
| Seed ortholog score | 77.8 |
| Seed ortholog evalue | 1.7e-12 |
| Seed eggNOG ortholog | 2880.D8LMA8 |
| Model size | 156 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 1 |
| EggNOG free text desc. | norepinephrine secretion |
| EggNOG OGs | KOG1259@2759,KOG1859@1 |
| Cds size | 156 |
| COG Functional cat. | P |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462505.3507166-CDS-Ecto-sp13_S_contig100701:1..157 | 1681462505.3507166-CDS-Ecto-sp13_S_contig100701:1..157 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig100701 2..157 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100701.97.1 >prot_Ecto-sp13_S_contig100701.97.1 ID=prot_Ecto-sp13_S_contig100701.97.1|Name=mRNA_Ecto-sp13_S_contig100701.97.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RRSRLLLPAPPVGRHEAALVWKLFRLARDSTALRVHRCSKCFRVFSGGVL
PG back to topmRNA from alignment at Ecto-sp13_S_contig100701:2..157+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig100701.97.1 ID=mRNA_Ecto-sp13_S_contig100701.97.1|Name=mRNA_Ecto-sp13_S_contig100701.97.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100701:2..157+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCTCTCGCCTGCTGCTCCCGGCGCCCCCCGTGGGGCGGCACGAGGC
CGCCCTGGTGTGGAAGCTGTTCCGGCTTGCGAGGGACTCCACCGCGCTTC
GGGTGCACAGGTGTTCAAAGTGTTTTCGTGTGTTTAGTGGAGGCGTCCTC
CCTGGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig100701:2..157+ >mRNA_Ecto-sp13_S_contig100701.97.1 ID=mRNA_Ecto-sp13_S_contig100701.97.1|Name=mRNA_Ecto-sp13_S_contig100701.97.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100701:2..157+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCTCTCGCCTGCTGCTCCCGGCGCCCCCCGTGGGGCGGCACGAGGC
CGCCCTGGTGTGGAAGCTGTTCCGGCTTGCGAGGGACTCCACCGCGCTTC
GGGTGCACAGGTGTTCAAAGTGTTTTCGTGTGTTTAGTGGAGGCGTCCTC
CCTGGG back to top
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