mRNA_Ecto-sp13_S_contig1007.94.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE) HSP 1 Score: 332 bits (852), Expect = 1.030e-107 Identity = 183/199 (91.96%), Postives = 188/199 (94.47%), Query Frame = 2 Query: 134 QRSTMRVGDHALVLVSAMGLGEMGVLCKGIAAAKTCQLAVPAAESTRPRGNLGSERACGCGSARRLHWGFASRGRRVALGLRGGAPAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAG---MPIAWRRSIRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAVAAFPFVAAGKGVGAA 721
++STMR+GDHALVLVSA+GLGEMGVL KGIAAAKT QLAVPAAES RPRGNLGSERACGCGSARRLH GFASRGRRVALGLRGGA AVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAG MPIAWRRSIRQTGSSSNPV LLAG VLAA+GAVVNG VAVAAFPFVAAGKGVGAA
Sbjct: 83 RQSTMRIGDHALVLVSALGLGEMGVLGKGIAAAKTYQLAVPAAESARPRGNLGSERACGCGSARRLHRGFASRGRRVALGLRGGALAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGEECMPIAWRRSIRQTGSSSNPVQLLAGVVLAAVGAVVNGVVAVAAFPFVAAGKGVGAA 281
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI) HSP 1 Score: 301 bits (770), Expect = 4.640e-100 Identity = 163/174 (93.68%), Postives = 167/174 (95.98%), Query Frame = 2 Query: 200 MGVLCKGIAAAKTCQLAVPAAESTRPRGNLGSERACGCGSARRLHWGFASRGRRVALGLRGGAPAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAVAAFPFVAAGKGVGAA 721
MGVL KGIAAAKT QLAVPAAES RPRGNLGSERACGCGSARRLH FASRGRR ALGLRGGAPAVSDRYNARMQV+ITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPV LLAGAVLAA+GAVVNGAVAV+AFPFVAAGKG+GAA
Sbjct: 1 MGVLGKGIAAAKTSQLAVPAAESARPRGNLGSERACGCGSARRLHRAFASRGRRAALGLRGGAPAVSDRYNARMQVIITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVQLLAGAVLAAVGAVVNGAVAVSAFPFVAAGKGIGAA 174
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.840e-14 Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 2 Query: 410 NARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRS 580
+A++Q MIT M+ L DELGY +EV+DM+PQIA+VVIE+SL RP+ GMP++WRRS
Sbjct: 61 SAKVQFMITNKMKATLKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGMPVSWRRS 117
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 5.340e-14 Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 443 MRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAV 676
MRK L D L Y +EV+DM+PQIAA+VIEK LPRPRAGMPIAWR+S R+ S+S A LAAI V G VAV
Sbjct: 1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRA---LAAIRGVAAGPVAV 75
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: W7TF16_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF16_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 5.010e-11 Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2 Query: 383 GAPAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRR 577
G D+YNA+MQ +IT M+KVL +EL Y A EV+ M P +AAVVI K L RP+ GMP WR+
Sbjct: 204 GGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRK 268
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A7S2XQL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQL8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.640e-8 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 419 MQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAW 571
+Q MIT NMR+VL+DELGY EV M P +AAVV++K L RP +GMP W
Sbjct: 126 VQYMITLNMRRVLVDELGYLPREVKHMRPDVAAVVVDKMLKRPSSGMPTPW 176
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A7S4IQ15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQ15_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.930e-5 Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 2 Query: 413 ARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRR 577
A +Q ITRNMR++L+ ELGY EV+ M P +AAV+ K L RP GMP + R
Sbjct: 196 ATVQYAITRNMRRLLVQELGYTRHEVERMKPDVAAVLTTKRLRRPGGGMPREFYR 250 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1007.94.1 >prot_Ecto-sp13_S_contig1007.94.1 ID=prot_Ecto-sp13_S_contig1007.94.1|Name=mRNA_Ecto-sp13_S_contig1007.94.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp MQRSTMRVGDHALVLVSAMGLGEMGVLCKGIAAAKTCQLAVPAAESTRPRback to top mRNA from alignment at Ecto-sp13_S_contig1007:15232..19358+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1007.94.1 ID=mRNA_Ecto-sp13_S_contig1007.94.1|Name=mRNA_Ecto-sp13_S_contig1007.94.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4127bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1007:15232..19358+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1007:15232..19358+ >mRNA_Ecto-sp13_S_contig1007.94.1 ID=mRNA_Ecto-sp13_S_contig1007.94.1|Name=mRNA_Ecto-sp13_S_contig1007.94.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1007:15232..19358+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |