mRNA_Ecto-sp13_S_contig10069.92.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: D7FLL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL2_ECTSI) HSP 1 Score: 707 bits (1825), Expect = 4.640e-249 Identity = 409/539 (75.88%), Postives = 421/539 (78.11%), Query Frame = 1 Query: 277 MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVRPGRNKGKGGKRSPRKAIQLEHLSTMMRLDEKSATGTTTNNTPAPNGVATGTASTTAPGNGCAQTPTNALPSPSPAPGDAMKRPSETRKRGSGGNDDSNDSSXXXXXXPATTAKIDDAVGYDTRDGSGE-EGRQARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEGGRGASENKTPRFSMQAPRASREGTNTHRV--TPSHAGGASQPATLRQGTPTNGPPTGASATDNVATTPQPRQTYPLPIDAGGRGTSAWARGGGEGTRISGGGVPPGFAGGVSEEESAPCRRRKKESRVDSPLAAAARAAAVYELPALRETAATKRRSH 1884
MFASLDLEQKELKKLWIEFGKIDTDNGGT NHESLVRFAFDLF AIETAEMEAMLRE+YGE F DSPAAALTLKRVKELSSSSDAGPTN TT+L LA+ GVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVS AFWKGCADRRNGVRPGRNKGKGGKRS RKAIQLEHLSTMM LDEKSATGTTT+NTPAPNG ATGTA+TTA GNGCAQTPT ALPS GD +K PSE RKRGSG XXX PAT K DDA G DT DG+GE E QARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEG G SENKTPRFSMQAP+ASREGT THRV TPSH GGAS+PATLRQG PTNGPPTG SATDN TPQPRQTYPLP+DAGGRGTSAWARGGGE I PPG AGGV EESAP RR+KKESRVDSPLAAAARAAAVYELPALRETAATK+RSH
Sbjct: 1 MFASLDLEQKELKKLWIEFGKIDTDNGGT------------------------------------------------NHESLVRFAFDLFDRDHSGAIETAEMEAMLREVYGEHFADSPAAALTLKRVKELSSSSDAGPTNETTLLALAKNGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSEAFWKGCADRRNGVRPGRNKGKGGKRSSRKAIQLEHLSTMMNLDEKSATGTTTDNTPAPNGSATGTANTTAQGNGCAQTPTKALPSXXXXXGDEIKAPSEARKRGSGXXXXXXXXXXXXSKTPATAGKTDDAAGCDTPDGAGEKEEGQARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEGSWGGSENKTPRFSMQAPQASREGTTTHRVSGTPSHGGGASRPATLRQGAPTNGPPTGTSATDNAVKTPQPRQTYPLPVDAGGRGTSAWARGGGEEPMIGXXXXPPGLAGGVGIEESAPGRRQKKESRVDSPLAAAARAAAVYELPALRETAATKQRSH 491
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A6H5KR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR14_9PHAE) HSP 1 Score: 709 bits (1829), Expect = 1.030e-248 Identity = 430/576 (74.65%), Postives = 444/576 (77.08%), Query Frame = 1 Query: 277 MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWK--------------------------------GCADRRNGVRPGRNKGKGGKRSPRKAIQLEHLSTMMRLDEKSATGTTTNNTPAPNGVATGTASTTAPGNGCAQTPTNALPSPSPAPGDAMKRPSETRKRGSGGNDDSNDSSXXXXXXPATTAKIDDAVGYDTRDGSGEEGR-QARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEGGRGASENKTPRFSMQAPRASREGTNTHRV--TPSHAGGASQPATLRQGTPTNGPPTGASATDNVATTPQPRQTYPLPIDAGGRGTSAWARGGGEGTRISGGGVPPGFAGGVSEEESAPCRRR-----KKESRVDSPLAAAARAAAVYELPALRETAATKRRSH 1884
MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPF YRLFGIXXXXXXXXXXXXEFVVSTWNCCTM TAEMEAMLRE+YGERF DSPAAALTLKRVKELSSSSDAGPTN TTILELA+KGVQV PDGRIYALSFEAFREFCRQHAGML PAFTLQKRVRSKIVS AFWK CADRRNGVR RN+GK R P+K+IQLEHLSTMM LDEKSATGTTT+NTPAPNG AT AQTP ALPSPSPA GD + P + RK GSGGND N+SS PAT KIDDA G +T DGSGE+ QARRGGDGGHEKGTGDGG PRKRRSGSRGVVAVEGDEG G SENKTPRFSMQAP+ SREG N HRV TPSH GGASQPATLRQGTPTN PPTG SATDNVA TPQPRQTYPLPIDAGGRGTSAWARGGGE + GGVPPGFAGGV EEESAP RR KKESRVDSPLAAAARAAAVYELPALR+TAATKRRSH
Sbjct: 1 MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFAYRLFGIXXXXXXXXXXXXEFVVSTWNCCTM----------------------TAEMEAMLREVYGERFADSPAAALTLKRVKELSSSSDAGPTNETTILELAKKGVQVAPDGRIYALSFEAFREFCRQHAGMLLPAFTLQKRVRSKIVSEAFWKVKPLVNRSLSTYGSSVRCLIPPHLCPDFPFEKECADRRNGVRQDRNRGKRENRPPQKSIQLEHLSTMMSLDEKSATGTTTDNTPAPNGSATXXXXXXXXXXXSAQTPKKALPSPSPALGDGIIAPPKARKSGSGGNDYCNNSSGSSSKTPATAEKIDDAGGCNTPDGSGEQMEGQARRGGDGGHEKGTGDGGAPRKRRSGSRGVVAVEGDEGSGGGSENKTPRFSMQAPQGSREGPNAHRVSGTPSH-GGASQPATLRQGTPTNDPPTGTSATDNVAKTPQPRQTYPLPIDAGGRGTSAWARGGGEEPLLGWGGVPPGFAGGVGEEESAPGRRPPDRRLKKESRVDSPLAAAARAAAVYELPALRDTAATKRRSH 553
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S3XL51_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL51_HETAK) HSP 1 Score: 105 bits (262), Expect = 6.030e-22 Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 1 Query: 280 FASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVRPG 915
F SL L +++ L + ID DN GT+ ++EL+++ L + F R+F I EFVVS WN CT+ +LV FAFDL XXXXXX E+E ML+E+YGE F S A L+ ++ + +G L L+ + +V + E F +FCR+HA +L PAFT+Q+ +R + W+ + RR V G
Sbjct: 27 FKSLGLHNRDVWALHSSYAAIDGDNSGTIEVKELMAYLGLH-SQFTNRVFRIFDEDGSGELDFREFVVSMWNYCTLAKNALVMFAFDLXXXXXXXXXXXXEVELMLKEVYGEGFQASQLAQKVLRHMRMI---------DGDARLPLSMQRCEV---------TAEQFGQFCRKHATLLLPAFTMQETLREAVGGKRLWERLSRRRFEVSDG 219
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S3M126_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M126_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.630e-20 Identity = 65/231 (28.14%), Postives = 106/231 (45.89%), Query Frame = 1 Query: 211 MGHHPSSFNKANFKRGIRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYG--ERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRR 897
MG S+F+ + + ++ L +KE++KL+ EF K+D DN G++ + ELL+H DL T + ++F I EFV++ WN CT+ +L FAFDL+ I E+ ML +++G E T+ A + + + + D + + FR F + H +LFPAF +Q ++ K + AFW+ ADRR
Sbjct: 1 MGCSTSAFDNEKHSPQFQKDLVQYRAMQLSEKEVRKLYNEFRKVDMDNSGSIGLPELLAHLDLPVTDYTQKVFSIFDEDRSGEVEFKEFVMTLWNYCTLTSSTLEMFAFDLYDSDGSGEISPNEVTQMLTDLFGKHEVKTNQHAKVMAAELLDHAKNFRDP--------------------------FTIDTFRAFVKTHQALLFPAFQMQLALQRKFLGTAFWEKNADRR 205
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S4A064_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A064_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.360e-19 Identity = 75/239 (31.38%), Postives = 110/239 (46.03%), Query Frame = 1 Query: 193 RS*LDQMGHHPSSFNKANFKRGIRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVR 909
R+ L G+ S ++K +R R F SL L++ ++ +L +F ID D G + + ELL + DL F R+F I EFVV+ W CT+ LV F XXXXXX AML+E+YG+R++ + A L+ + ++ D + EAF EFCR H ML PAF +Q +R++I+ GA+W DRR+ R
Sbjct: 224 RNNLYHYGYFKSIYSK---NAAVRPLRSTFESLGLKEDDVARLHEQFVIIDKDGSGAIELWELLDYLDLQRNRFAKRVFAIFDADGSNQIDFKEFVVALWQYCTLGRPQLVMFXXXXXXXXXXXXXXXXXFNAMLKELYGKRYSKNTTAVNLLRHINAMTKRRDTDEVD------------------------VEAFAEFCRTHPAMLMPAFAMQTTMRARIMGGAWW----DRRSNER 431
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: D7FMZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ9_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 9.060e-16 Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 1 Query: 412 FGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRR 897
F R+F I EFV+S WN CT++ +L+ FAFDL+ I+ E+E +L+E+YG F + A + +++ G ++G I + + FREFCR H +L+PAF LQ +++ KI+ FW C++ R
Sbjct: 6 FTKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLYDNDNSGEIDIGEVELLLKEVYGREFQSNTHAQTIMAKLR----------------------GSELGLARNI---NVDQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWIACSNAR 142
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S4RTF3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RTF3_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.250e-13 Identity = 48/203 (23.65%), Postives = 94/203 (46.31%), Query Frame = 1 Query: 268 YRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFW 876
+ F++L +++ ++K W+ F +I+ G ++I E L++ ++D P+ + F EF+VS WN CT+N E+L F FD++ + E+E M++E +G+ +S L+ V + E+G L+ +F F H+ +LFP F +Q+ +++K++ +W
Sbjct: 50 WEMTFSALGWDRETIEKFWVVFCRINKSLSGEITILEFLNYFNMDRAPYVEKCFSYFDTTGGDDIDFLEFMVSVWNICTLNVETLTNFTFDIYDIDSDGELSFPEIERMVQEFFGKEGIESGLGKECLRDVTHFAE----------------ERGG---------VLNLTSFTVFTMNHSMLLFPIFQIQRIIQTKVMGLRYW 227
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A482RZW0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZW0_9ARCH) HSP 1 Score: 76.3 bits (186), Expect = 9.750e-13 Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 259 IRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFT-PFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYG 612
+ Y+ F +L + E+ +L F ID D+ G++ ++ELL+H D++ F R+F I EFV+S WN CT++ +L FAFDL+ + E+E +L+++YG
Sbjct: 16 FKPYKSQFEALKFKPTEVVRLKRIFDSIDIDHSGSIGLKELLTHLDIESNNKFSKRVFSIFDEDGSGQVDFREFVLSIWNYCTLSQATLALFAFDLYDADRTGFLSPVEIEGILKDLYG 134 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10069.92.1 >prot_Ecto-sp13_S_contig10069.92.1 ID=prot_Ecto-sp13_S_contig10069.92.1|Name=mRNA_Ecto-sp13_S_contig10069.92.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=558bp MGHHPSSFNKANFKRGIRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGback to top mRNA from alignment at Ecto-sp13_S_contig10069:368..5647+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10069.92.1 ID=mRNA_Ecto-sp13_S_contig10069.92.1|Name=mRNA_Ecto-sp13_S_contig10069.92.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10069:368..5647+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10069:368..5647+ >mRNA_Ecto-sp13_S_contig10069.92.1 ID=mRNA_Ecto-sp13_S_contig10069.92.1|Name=mRNA_Ecto-sp13_S_contig10069.92.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1674bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10069:368..5647+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |