mRNA_Ecto-sp13_S_contig10067.91.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A6H5J7V5_9PHAE (VHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7V5_9PHAE) HSP 1 Score: 412 bits (1060), Expect = 3.770e-137 Identity = 232/245 (94.69%), Postives = 234/245 (95.51%), Query Frame = 1 Query: 253 MASLFRIAPPMDDSARTRCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDPGAGSLLDKPDGQAGAPAPAGATASGVVVATAVPQGGERXXXXXXXXXXXXXXXXXXSPPNDLRELS 987 MASLFRIAPPMDDSARTRCDAMMKDVE+ACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSN VLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFK NRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDPGAGSLLD+PDGQAGA A AGATASGVVVATAVPQ GER XXXXXXXXXXXXX SPPNDLRELS Sbjct: 1 MASLFRIAPPMDDSARTRCDAMMKDVESACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNTTVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKPNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDPGAGSLLDRPDGQAGATAAAGATASGVVVATAVPQSGERAAXXXXXXXXXXXXXS--SPPNDLRELS 243
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A835YSD0_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD0_9STRA) HSP 1 Score: 209 bits (531), Expect = 7.560e-58 Identity = 101/194 (52.06%), Postives = 147/194 (75.77%), Query Frame = 1 Query: 262 LFRIAPP-MDDSARTRCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP-GAGSLLD--KPDGQAG 831 + R+ PP M D+ +++ + +++ V++AC E L S DW LNMQ+VD++N + VV+ EV+R +RK+L ++ V+ +ALTL ETLVKNC P+HREIA E FM + +A+ ++ +T+R+SL +A+++LD+IQ+WGEAFLP+RRE PLFVETYH LR +GLPF AQY++DR PVL+P G GSLLD +P+ Q G Sbjct: 8 MMRVVPPLMTDAEKSKSETLVRMVDSACSEFLTSADWALNMQLVDEINNSRQQVVVAEVVRAVRKRLAHKSIPVVMLALTLTETLVKNCGMPLHREIAKENFMQDMTVLAKRHTTRTSRESLQVANKTLDLIQSWGEAFLPQRRELPLFVETYHRLRKDGLPFDAQYKADRAPVLEPVGPGSLLDHQQPEAQRG 201
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A4D9CTC8_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTC8_9STRA) HSP 1 Score: 164 bits (414), Expect = 7.530e-42 Identity = 74/154 (48.05%), Postives = 111/154 (72.08%), Query Frame = 1 Query: 328 VENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP 789 VE A ++LL+ DW +NM++VD LNR + V E+IR +RK+L + V+ +AL L ET+VKNC VH+E+A+ +FMA +A++ARTYS +T +++L +AD+++D+IQ+WGEAFLP + PLF +TYH+LR EGL F QY + P++ P Sbjct: 30 VEKATSDILLAVDWAMNMEVVDALNRSSEQAVKREIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVHKEVATPKFMATMARVARTYSERTGKENLQVADKAMDLIQSWGEAFLPMAHQLPLFSQTYHQLRREGLTFRTQYDETKVPIMTP 183
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A7S2HS54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HS54_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.120e-37 Identity = 68/141 (48.23%), Postives = 99/141 (70.21%), Query Frame = 1 Query: 328 VENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTN-RQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPF 747 ++ A + L + DW+ NMQ+VD++N + V+ E R +RKKL S N+ V+ +AL L ETLVKNC+ H+ IA+ +FM ++++ARTY+ + + R + I D+ L++IQ+WGEAFLP R PLFVETYH+LR EGLPF Sbjct: 43 IDQATSDYLQTADWSANMQLVDEINAIRTQAVIDETARSIRKKLQSKNVRVVKLALMLIETLVKNCNVAFHQAIATTKFMETISRVARTYTKRNSKRDEMEIGDKVLELIQSWGEAFLPHRDTMPLFVETYHKLRKEGLPF 183
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A0P1AM73_PLAHL (VHS domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AM73_PLAHL) HSP 1 Score: 147 bits (371), Expect = 2.490e-36 Identity = 75/162 (46.30%), Postives = 105/162 (64.81%), Query Frame = 1 Query: 304 RCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP 789 R M + A E DW +++VD L+ + VL E IR LR +LG + V+ +ALTL E++VKNC D VH+EIA+E+FM+ + ++ RT+S K RQS+ IA + LD++QAWGEAFLP R +FPLFV+TYH +R +G+ F QY + PVL P Sbjct: 38 RIKQMTDMIAQATNEFEPDEDWNSILRVVDALSNVSNRAVLKESIRYLRLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMSEMEELHRTHSNKRGRQSMEIASRVLDMVQAWGEAFLPFRHDFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTP 199
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A2P4YGK1_9STRA (VHS domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGK1_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.010e-35 Identity = 72/162 (44.44%), Postives = 102/162 (62.96%), Query Frame = 1 Query: 304 RCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP 789 R M + + A + DW +++VD L+ + VL E IR L+ +LG ++ V+ +ALTL E++VKNC D VH+EIA+E FM + + R ++ K R S+ IA + LD+IQAWGEAFLP R EFPLFV+TYH +R +G+ F QY + PVL P Sbjct: 31 RIKQMTEMIAQATSDYEADEDWDRILRVVDALSNISNRAVLKESIRYLKLRLGDASSRVVILALTLTESVVKNCGDLVHQEIATESFMGEMEALHRLHANKRGRDSMEIASRVLDMIQAWGEAFLPFRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTP 192
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: G5AI13_PHYSP (VHS domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AI13_PHYSP) HSP 1 Score: 144 bits (363), Expect = 2.480e-35 Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 1 Query: 304 RCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP 789 R M +E A + DW +++VD L+ + VL E IR L+ +LG + V+ +ALTL E++VKNC D VH+EIA+E FM+ + + RT++ K R S+ IA + LD++QAWGEAFLP R EFPLFV+TYH +R +G+ F QY + PVL P Sbjct: 42 RIKQMTDMIEQATSDFEADEDWDRILRVVDALSNVSNHAVLKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEPFMSEMEALYRTHASKRGRDSMEIASRVLDMVQAWGEAFLPYRHEFPLFVDTYHNMRKKGIKFPDQYDETKVPVLTP 203
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A329S7I2_9STRA (VHS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S7I2_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.320e-34 Identity = 72/162 (44.44%), Postives = 103/162 (63.58%), Query Frame = 1 Query: 304 RCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP 789 R M + A + DW +++VD L+ + VL E IR L+ +LG + V+ +ALTL E++VKNC D VH+EIA+E+FM + + RT++ K R+S+ IA + LD++QAWGEAFLP R EFPLFV+TYH +R +G+ F QY + PVL P Sbjct: 42 RIKQMTDMIAQATSDYEADEDWDRILRVVDALSNVSNRAVLKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMGEMETLYRTHANKRGRESMEIASRVLDMVQAWGEAFLPFRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTP 203
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: A0A6A3KF79_9STRA (VHS domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KF79_9STRA) HSP 1 Score: 141 bits (355), Expect = 5.240e-34 Identity = 71/162 (43.83%), Postives = 102/162 (62.96%), Query Frame = 1 Query: 304 RCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDP 789 R M + A + DW +++VD L+ + VL E IR L+ +LG + V+ +ALTL E++VKNC D VH+EIA+E FM+ + + T++ K R+S+ IA + LD++QAWGEAFLP R EFPLFV+TYH +R +G+ F QY + PVL P Sbjct: 42 RIKQMTDMIAQATSDFEADEDWDRILRVVDALSNVSNRAVLKESIRYLKLRLGDPSARVIILALTLTESIVKNCGDLVHQEIATEPFMSEMEALYSTHASKRGRESMEIASRVLDMVQAWGEAFLPYRHEFPLFVDTYHNMRKKGIKFPDQYDESKVPVLTP 203
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Match: M4BWH7_HYAAE (VHS domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWH7_HYAAE) HSP 1 Score: 140 bits (352), Expect = 1.640e-33 Identity = 73/168 (43.45%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 304 RCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNREQDPVVLTEVIRILRKKLGSSNMMVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKTNRQSLAIADQSLDIIQAWGEAFLPRRREFPLFVETYHELRAEGLPFSAQYQSDRPPVLDPGAGSLL 807 R M + A + DW +++VD L+ ++ VL E IR L+ +LG S+ V+ +ALTL E++VKNC D VH+EIA+E FM + + R ++ + R S+ IA + LD+IQAWGEAFLP R EFPLFV+TYH +R +G+ F QY + PVL P + L Sbjct: 42 RIQEMTDMIAQATSDFEADEDWDRILRVVDALSNIRNRAVLKESIRYLKLRLGDSSSRVVILALTLTESIVKNCGDLVHQEIATEPFMNEMEALYRVHAARRGRASMEIASRVLDMIQAWGEAFLPFRNEFPLFVDTYHNMRKKGVKFPDQYDESKVPVLTPSSSDGL 209 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10067.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10067.91.1 >prot_Ecto-sp13_S_contig10067.91.1 ID=prot_Ecto-sp13_S_contig10067.91.1|Name=mRNA_Ecto-sp13_S_contig10067.91.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp MASLFRIAPPMDDSARTRCDAMMKDVENACGEMLLSPDWTLNMQIVDDLNback to top mRNA from alignment at Ecto-sp13_S_contig10067:458..4044- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10067.91.1 ID=mRNA_Ecto-sp13_S_contig10067.91.1|Name=mRNA_Ecto-sp13_S_contig10067.91.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10067:458..4044- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10067:458..4044- >mRNA_Ecto-sp13_S_contig10067.91.1 ID=mRNA_Ecto-sp13_S_contig10067.91.1|Name=mRNA_Ecto-sp13_S_contig10067.91.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10067:458..4044- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |