mRNA_Ecto-sp13_S_contig10064.88.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10064.88.1
Unique Name	mRNA_Ecto-sp13_S_contig10064.88.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A6H5JJG7_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG7_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.290e-56
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1

Query:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAEQQQSAGGAGASGAQW 285
            MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNR+QATEMFRLVSEAYEVLGD EKKRFYDTYGHEGVASAEQQQSA GAGASGAQW
Sbjct:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNRDQATEMFRLVSEAYEVLGDPEKKRFYDTYGHEGVASAEQQQSAEGAGASGAQW 95

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: D8LSR9_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR9_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.040e-55
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1

Query:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAEQQQSAGGAGASGAQW 285
            MAGKPCHYEVLGL RSASSGEVKKAYRKKALYWHPDKNPNNR+QATEMFRLVSEAYEVLGD EKKRFYDTYGHEGVASAEQQQSA GAGASGAQW
Sbjct:    1 MAGKPCHYEVLGLERSASSGEVKKAYRKKALYWHPDKNPNNRDQATEMFRLVSEAYEVLGDPEKKRFYDTYGHEGVASAEQQQSAEGAGASGAQW 95

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A7J7JLY2_BUGNE (DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JLY2_BUGNE)

HSP 1 Score: 102 bits (253), Expect = 1.370e-25
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAE 240
            +YEVLG++R+A+S E+KKAYRK+AL WHPDKNP  +E+A   F+L++EAYE+L D+EK++ YD YGHEG+   E
Sbjct:    8 YYEVLGISRTATSAEIKKAYRKQALQWHPDKNPEKKEEAETRFKLIAEAYEILSDKEKRQIYDKYGHEGLTGNE 81

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A7J7JPH2_BUGNE (DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JPH2_BUGNE)

HSP 1 Score: 102 bits (253), Expect = 4.000e-25
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAE 240
            +YEVLG++R+A+S E+KKAYRK+AL WHPDKNP  +E+A   F+L++EAYE+L D+EK++ YD YGHEG+   E
Sbjct:    8 YYEVLGISRTATSAEIKKAYRKQALQWHPDKNPEKKEEAETRFKLIAEAYEILSDKEKRQIYDKYGHEGLTGNE 81

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A7S9B0_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S9B0_NEMVE)

HSP 1 Score: 98.2 bits (243), Expect = 6.720e-25
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVAS 234
            +YEVLG+ RSAS  +VKKAYR++AL WHPDKNP NRE A E F+ +SEAYEVL D+EK+  YD YG EG+ S
Sbjct:    5 YYEVLGVPRSASEEDVKKAYRRQALRWHPDKNPTNREHAEEKFKKLSEAYEVLSDKEKRDIYDKYGKEGLTS 76

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A6P6KJS8_CARAU (dnaJ homolog subfamily B member 6-like isoform X2 n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6KJS8_CARAU)

HSP 1 Score: 100 bits (249), Expect = 5.170e-24
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVA 231
            +YE+LG+ ++ S  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG++
Sbjct:    4 YYEILGVTKNTSQDDIKKAYRKKALKWHPDKNPNNKEQAEKMFKEISEAYEVLSDENKRRQYDKYGKEGLS 74

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: UPI000C0480FA (dnaJ homolog subfamily B member 6-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0480FA)

HSP 1 Score: 100 bits (248), Expect = 5.750e-24
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGV 228
            +YE+L + +SAS  E+KKAYRK AL WHPDKNP+N+E+A E F+L+SEAY+VL D+EK+R YDTYG EG+
Sbjct:    4 YYEILDVPKSASEQEIKKAYRKLALKWHPDKNPDNKEEAEEKFKLISEAYDVLSDKEKRRVYDTYGKEGL 73

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A673GJY2_9TELE (DnaJ homolog subfamily B member 6-like n=4 Tax=Cyprinoidei TaxID=30727 RepID=A0A673GJY2_9TELE)

HSP 1 Score: 101 bits (251), Expect = 1.010e-23
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVA 231
            +YE+LG+ ++AS  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG++
Sbjct:    4 YYEILGVTQNASHDDIKKAYRKKALKWHPDKNPNNKEQADKMFKEISEAYEVLSDENKRRQYDKYGKEGLS 74

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A673JAF1_9TELE (DnaJ homolog subfamily B member 6-like n=21 Tax=Cyprinidae TaxID=7953 RepID=A0A673JAF1_9TELE)

HSP 1 Score: 101 bits (251), Expect = 1.100e-23
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVA 231
            +YE+LG+ ++AS  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG++
Sbjct:    4 YYEILGVTKNASHDDIKKAYRKKALKWHPDKNPNNKEQAEKMFKEISEAYEVLSDENKRRPYDRYGKEGLS 74

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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A8C1G5Z6_CYPCA (DnaJ heat shock protein family (Hsp40) member B6b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1G5Z6_CYPCA)

HSP 1 Score: 99.8 bits (247), Expect = 1.160e-23
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1

Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGV 228
            +YE+LG+ ++ S  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG+
Sbjct:    4 YYEILGVTKNTSHDDIKKAYRKKALKWHPDKNPNNKEQAEKMFKEISEAYEVLSDENKRRQYDKYGKEGL 73

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5JJG7_9PHAE	1.290e-56	96.84	HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131...	[more]
D8LSR9_ECTSI	6.040e-55	95.79	Heat shock protein 40 like protein/ DnaJ domain co...	[more]
A0A7J7JLY2_BUGNE	1.370e-25	59.46	DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A...	[more]
A0A7J7JPH2_BUGNE	4.000e-25	59.46	DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A...	[more]
A7S9B0_NEMVE	6.720e-25	65.28	Predicted protein (Fragment) n=2 Tax=Nematostella ...	[more]
A0A6P6KJS8_CARAU	5.170e-24	61.97	dnaJ homolog subfamily B member 6-like isoform X2 ...	[more]
UPI000C0480FA	5.750e-24	64.29	dnaJ homolog subfamily B member 6-like n=1 Tax=Sty...	[more]
A0A673GJY2_9TELE	1.010e-23	63.38	DnaJ homolog subfamily B member 6-like n=4 Tax=Cyp...	[more]
A0A673JAF1_9TELE	1.100e-23	63.38	DnaJ homolog subfamily B member 6-like n=21 Tax=Cy...	[more]
A0A8C1G5Z6_CYPCA	1.160e-23	62.86	DnaJ heat shock protein family (Hsp40) member B6b ...	[more]

Pages

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10064:823..3642-
coding sequence from alignment at Ecto-sp13_S_contig10064:823..3642-

protein sequence of mRNA_Ecto-sp13_S_contig10064.88.1

>prot_Ecto-sp13_S_contig10064.88.1 ID=prot_Ecto-sp13_S_contig10064.88.1|Name=mRNA_Ecto-sp13_S_contig10064.88.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFR
LVSEAYEVLGDQEKKRFYDTYGHEGVASAEQQQSAGGAGASGAQWVSSGE
E*

mRNA from alignment at Ecto-sp13_S_contig10064:823..3642-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10064.88.1 ID=mRNA_Ecto-sp13_S_contig10064.88.1|Name=mRNA_Ecto-sp13_S_contig10064.88.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10064:823..3642- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGTAAACCTTGCCACTATGAGGTGCTGGGGCTAGCGCGGAGCGC
TAGCTCAGGGGAGGTGAAGAAAGCCTACCGCAAAAAGGCCTTGTATTGGC
ACCCGGTGAGTGAGTGTGGTCCGCGATCATCCGCTCTACTACTGCTGTCC
TGCTGCTGCTTGTAGCCTCAGGCCCTCTACCGTCCACCCTTCAGCCTTTT
ACCTCGTTTGTCGGTGGAATTCGCTGCTCCTGTTTTGTTTCTGGTGGCGG
CATTGCTGCTCTATCGCAGCGGGTCGGCGGTCACACATGCACGTGTGTGT
GTGTGGTGTTTTCTAGAACGTTTCTGCTAAATACCTGTAGTCTGGTGGTG
GCGTCATCATGTCTGAGATGAACCGACACATCATCGGCGTCCGGACGTTA
CTTTGCTGTTCACATCATCGGTATCTACCACAGGAGCTCCAGTGGGATCG
CCGGGTCTGCCCGCTGTCACCCCAGTCCAGGAGAGCCTTCGCACTTTGCA
CGTTGACCTCTAGCACTTTGCCGTTCTCGTGGGAGGAGTCTGTCCGCAAC
TCGCTATGTTCATGGTTCTGGTTGAATAACAGGGTGAACATGGGTCACAC
GCAGTCGGGCAACACGAAGCTTGCAGACCGTATGACGCCATCTGATCGGT
TGTCATATTTCCGCCCCCGATCCTGAATCGTCTATTGACGGGGTGGACCC
GATCGTGGTTACAAATTTTCCATATTTTGTATGCCATCAATACTACCCAA
CGAATCCATCTCTATCGAAGAAAGGAGTCCAAAGGTGCATTAGCAATGAA
GTCATACATAGCGTGAGCAATTTCCCTCGTGGAAAGAGGCCGGGCGGTTC
GACCAACGGCCCGCGCACGCAAAGGCACAAAAAGCAAAATAAACTTATTT
AGAAACATAGCCCGTATCCAGCCTGTATTCTTCCCATTCACTGCGAAGGC
TTCAGGACACCCCCTTCGACTGCGGTATTATCTTGAATGGGTGAAGCAGT
CTTTCTTCGATCGTACTTTCATGTATGTTGCCTACAAAAGCAATGCTGCG
TGACACGTGCCAGCAGGTACTTGATTTTTTCTGATCCCTTACTTGAAAAG
CAGGACAATGTCTTCCAACTCCTGCTGCAGCCCCCACGTCGGTACATGTG
TTAGAACCCGTAGTCTACAATACACACTTGATTAGCAAGCGTGTTCGCCT
TTTTTTCTTCCGCCACAAGAATGACTTACTTTTCTTCTTTGGCCAGCCGG
TTAGCGCGGTCGATACTACCGAGCAAAGGGCACCCACAATTGAGATACTT
GTACATCGAACACGTCACGTGCGGTCGATACTAGCAGTAAAGACACGCAC
GTCCGGAAAGCTCATCCCTCCGTTTCCGACACCTCCAACGGCGGTCGACA
GAGGGGGAACAACCTCTCGTTTGAACATACCATACAAGTAACAACCAGTT
ACATGCAAGTGACCAACAAGGAAAGTAACAATACAAGGATCTCTTCTCCT
CTGTTACTCCTCTCCCATCCAAAAAGCTACACGATAACATCAACCCCGTC
CCCTGTCTGCGACCCCCCGCACCTCCGCCGTTTTACTTTTCTCAGGATAA
GAACCCCAACAACAGGGAACAGGCTACGGAGATGTTTCGGCTCGTTTCGG
AGGTGATCTTGAATATGTGGCGCTGTACATGTATGCACCTTCTGCCGCAG
CTTCATGCAGTATAATAGTGGCATTGGAAGTGTTTACTCTTGAACTGCTC
ATGTTCGATCGCATCTTTTGCCGCAGTTTTGTGTAGTGCCATCGGGGATG
CTTAATGCCTTGGGGTGTTGGTTCATTTTTGTCAGATGTTTCTGGCTAGG
GAGGAAGACCCGTGGAGCAGTGGACCGCCTACGCCGGTTGTTAAGATTAC
AGAGAAAAAGAGTAGGGAGGGGGCACGCAGACCCTATCCCCTAACCCTAA
CGCTAATCCCAAAGTACGGATTGAATACTTTGTCCCACAATTATCCCACA
AGTTTTCTTAATCATTTATGCTGCGTAGACGGTACTGGGAGTAGGTAGAG
AATGCCCTGAGCATAGCGGGTCAATAGAAAGGGAAGGCGTGGACCACTTT
TGCAACAACGAGAGACCTGAGACACTCACTCATTCACAAGTTATTGGAGT
TGTTTAGGCGTTTTTTTTCCTTCTTTTTTTGTGCTTTTCAGGGTCAGCGT
GGACGGTGTGTAACGGTACGGTGCAAGGCACCCCATTTTTTTTTTTCAAC
AGCACATTTTGCGATTTTCGGAGTTCCTAGATACGTAAAAGCAGCGCAGT
TTTTAGTCATCGCCCAAGAAAGCGCAGCCCGATTGTGGGTTGAATGACGT
GTTCGAAAACGATTTAACCGGTAACCTCTTCCTCCCCCCCAAGGATTACG
CGCCTGTACAAAGCGCACGTCGCGCGAAAAGAGAGATCAGTGAGAATCTA
GGCAGCCATGGCCCTGACAACGTACCCGCCGTTACCCTATCGTGGTGGCC
GCCCTCAAGCGATAGGCCGAGTCTCGTTGCTGTTGGTGTTGTTGTTTTCG
TTGCTGCTGCTGCTGCTGCTGCTGCTCCTACTATTGTCGCCACCCCCCTC
ACTGTGTCGTTGTTGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGGT
GCTGCTGGTGTCTGTTCGATGTTCAGGCGTACGAGGTCCTGGGTGACCAG
GAGAAGAAGAGGTTCTACGACACGTACGGGCACGAAGGCGTTGCTAGCGC
CGAACAGCAGCAATCGGCGGGAGGGGCAGGAGCCTCCGGTGCTCAATGGG
TGAGCAGCGGCGAGGAGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10064:823..3642-

>mRNA_Ecto-sp13_S_contig10064.88.1 ID=mRNA_Ecto-sp13_S_contig10064.88.1|Name=mRNA_Ecto-sp13_S_contig10064.88.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10064:823..3642- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGTAAACCTTGCCACTATGAGGTGCTGGGGCTAGCGCGGAGCGC
TAGCTCAGGGGAGGTGAAGAAAGCCTACCGCAAAAAGGCCTTGTATTGGC
ACCCGGATAAGAACCCCAACAACAGGGAACAGGCTACGGAGATGTTTCGG
CTCGTTTCGGAGGCGTACGAGGTCCTGGGTGACCAGGAGAAGAAGAGGTT
CTACGACACGTACGGGCACGAAGGCGTTGCTAGCGCCGAACAGCAGCAAT
CGGCGGGAGGGGCAGGAGCCTCCGGTGCTCAATGGGTGAGCAGCGGCGAG
GAGTAG