mRNA_Ecto-sp13_S_contig1006.82.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1006.82.1 vs. uniprot
Match: D8LSX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX4_ECTSI) HSP 1 Score: 1159 bits (2998), Expect = 0.000e+0 Identity = 625/724 (86.33%), Postives = 636/724 (87.85%), Query Frame = 1 Query: 400 MFPKREAIQQLKDRLQAWCSEENRREQEGVSLPGGTSREDRAPRRWQAYEFIPLPSRNRTLDSEVLGMNVGRPVNDTRLEVTVDFETEDEAREVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGNGEDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEESIADPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHRHYDGYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTGTMVPLVAIGGAEDGVSPPTMVVLEGLKLGVRHFVLEVSSSGVNEAVEGLQAALAFGVVKRDDLFVTMIVGESSSVXXXXXXIAAAVSETLALGRVDDGGIEADGTATRLLDSVDALVQLSTATPMARYFDDDRQFLEMWDEAHQAAASLPRESTGLPAAPTEQTDLDTPVDDDPFGSPFDSGSPGGSFDESSYDDSSVVGESRPFDIPADSLAXXXXXXXXXXXXXADGSNDELDSRLGIHLGVGGHGPKVADRLALLVDQSPAAGAAA-DVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVTGDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWMTEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGEEADGVGDSYDGLWGMGEDE 2568
MFPKREA+QQLKDRLQAWC+EENRREQE VSLPGGTSREDR PRRWQAYEFIPLPSRNRTLDSEVLGMNVGR VNDTRLEVTVDFE EDEA EVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELG+GEDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEES+ADPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHR+YDGYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTG +VPLVAIGGAEDGVSPPTM+VLEGLKLGVRHFVLEV SSGV EAVEGLQAALAFGVVKRD LFVTMIVGES+S IAAAVSETLA GRVDDGGIE DGTATRLLDSVDALV A YFDDDR FLEMWDEAHQAAAS PRESTGLPA PTEQT LDTP DDDPFGS XXXXXXXXXXXXX HLGVGGHG KVADRLALLVDQSPAAGAAA DVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLE AGGRGAEEA KGAAAAADYEHEDVT DEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEW++EIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGEEADGVGDSYDGLWGM +DE
Sbjct: 1 MFPKREAVQQLKDRLQAWCAEENRREQEDVSLPGGTSREDRPPRRWQAYEFIPLPSRNRTLDSEVLGMNVGRSVNDTRLEVTVDFEKEDEALEVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGDGEDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEESMADPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHRNYDGYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTGAIVPLVAIGGAEDGVSPPTMIVLEGLKLGVRHFVLEVGSSGVKEAVEGLQAALAFGVVKRDHLFVTMIVGESNSAVAGGRGIAAAVSETLASGRVDDGGIETDGTATRLLDSVDALV---LARESGEYFDDDRLFLEMWDEAHQAAASPPRESTGLPAVPTEQTGLDTPADDDPFGSXX------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLGVGGHGSKVADRLALLVDQSPAAGAAAADVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLECAGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGEEADGVGDSYDGLWGMDDDE 697
BLAST of mRNA_Ecto-sp13_S_contig1006.82.1 vs. uniprot
Match: A0A6H5L373_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L373_9PHAE) HSP 1 Score: 324 bits (831), Expect = 4.810e-99 Identity = 181/218 (83.03%), Postives = 185/218 (84.86%), Query Frame = 1 Query: 1588 MARYFDDDRQFLEMWDEAHQAAASLPRESTGLPAAPTEQTDLDTPVDDDPFGSPFDSGSPGGSFDESSYDDSSVVGESRPFDIPADSLAXXXXXXXXXXXXXAD--GSNDELDSRLGIHLGVGGHGPKVADRLALLVDQSPAAGAAADVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVTG 2235
MARYFDDDRQFLEMWDEAH AAASLPRESTGLPAAPTEQTDLDTPVDD+PF D SS DD+SVVGE RPFD PADSL XXXX GSNDELDSRLG HLGVGGHGPKVADRLALLVDQSPAAG+AADVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDV+G
Sbjct: 1 MARYFDDDRQFLEMWDEAHHAAASLPRESTGLPAAPTEQTDLDTPVDDNPFXXXXXXXXXXXXXDGSSSDDNSVVGEGRPFDFPADSLTADSPAAESSXXXXXXXXGSNDELDSRLGSHLGVGGHGPKVADRLALLVDQSPAAGSAADVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVSG 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1006.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1006.82.1 >prot_Ecto-sp13_S_contig1006.82.1 ID=prot_Ecto-sp13_S_contig1006.82.1|Name=mRNA_Ecto-sp13_S_contig1006.82.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=857bp MKHSRAARNTAVGVMNCCRRPFTAAIVALLFLSTAPLVCSFFSPVPTATSback to top mRNA from alignment at Ecto-sp13_S_contig1006:4577..17576+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1006.82.1 ID=mRNA_Ecto-sp13_S_contig1006.82.1|Name=mRNA_Ecto-sp13_S_contig1006.82.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=13000bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1006:4577..17576+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1006:4577..17576+ >mRNA_Ecto-sp13_S_contig1006.82.1 ID=mRNA_Ecto-sp13_S_contig1006.82.1|Name=mRNA_Ecto-sp13_S_contig1006.82.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1006:4577..17576+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |