mRNA_Ecto-sp13_S_contig1006.81.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: D8LSX5_ECTSI (Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX5_ECTSI) HSP 1 Score: 605 bits (1560), Expect = 2.190e-209 Identity = 371/673 (55.13%), Postives = 383/673 (56.91%), Query Frame = 1 Query: 40 MIAVEPAAPGAVLRADAGGSTTSGVLGLHQLQPDVTEQTEDNSSLLLTAAASPHQHVGVAATRDFATSRATSDQADTQDAGLGRKGKHRHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLVRRPRPKDRKHSQQQTKALAQTGNGDDKARRETRSTIGRQPAVGRAHHEVWRRGEAQKARLRGGGSLALKXXXXXXXXQARFYAQVGHNASQEGSGSSGEADWGHGGPFAVGVREMGSSGVNHGMARVGEGGERGGGNTPSPSAGRTELASEGGFTERRHGREKGSVVAAKQXXXXXXXXXXXXXXXXXXXXXTHSDNAVGDYDDXXXXXXXEPIIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSGTSDGVSAAAIAGGRWQGSNSNLSAADGQDGGGHMATAAGITTTAGPEMCPDGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRHGMTSCSECGSPDNFPDIVVSVAVAPPPGHGGEAPGRRRPMKSTHGDSEVGIITDGRKHNR 2058 MIAVEPAAPGAVLRADAGGST SGVLGL QLQP+VTE+T D+ SLLLT A SPHQH VAA+RDF SRATSD+ADTQDAGLGRK HRHRQQQNQYRV+LENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGR FSNRYDSGSVEGSVIKESM IGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTF QLLQEQFGGTGDLFSVYLT + GGERGGG PSPS GR ELASEG F +RRHG KGS VAAKQ SNLSAADGQDGGGH A AGI TTAGPEMCPDGCQAIVDTGSSLLVPPR QYREVM+QIIGGRADCRYR+GMTSCSECGSPD+FPDIV+SVAVAP RPMKS HGDSE GII DGRKHNR Sbjct: 1 MIAVEPAAPGAVLRADAGGST-SGVLGLRQLQPNVTEETVDDRSLLLTEAGSPHQHFDVAASRDFVKSRATSDEADTQDAGLGRK--HRHRQQQNQYRVVLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFAQLLQEQFGGTGDLFSVYLTRA---------------------------------------------------------------------------------------------------------------------------------------------------GGERGGGGLPSPSTGRMELASEGSFIKRRHGTAKGSAVAAKQ--------------------------------------------------------------------------------------------------SNLSAADGQDGGGHTAATAGIVTTAGPEMCPDGCQAIVDTGSSLLVPPRSQYREVMRQIIGGRADCRYRYGMTSCSECGSPDDFPDIVISVAVAPXXXXXXXXXXXXRPMKSVHGDSEAGIINDGRKHNR 425
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A6H5L1Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q3_9PHAE) HSP 1 Score: 421 bits (1082), Expect = 1.880e-135 Identity = 236/278 (84.89%), Postives = 243/278 (87.41%), Query Frame = 1 Query: 1204 MGSSGVNHGMARVGEGGERGGGNTPSPSAGRTELASEGGFTERRHGREKGSVVAAKQXXXXXXXXXXXXXXXXXXXXXTHSDNAVGDYDDXXXXXXX-EPIIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSGTSDGVSAAAIAGGRWQGSNSNLSAADGQDGGGHMATAAGITTTAGPEMCPDGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRHGMTSCSECGSPDNFPDIVVSVAVAPPPGHGGEAPGRRRPMKSTHGDSEVGII 2034 MGSSGVNHGMARVG GGERGGG+ PSPSAGRTELASEG F ERRHGREKGS VAAKQ XXXXXXX H+ NAVGDYD XXXXXXX EP+IVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTS TSD VS AA+AGGRWQ S SNLSAADGQDGGGH AT AGIT TAGPEMCP+GCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYR+GMTSCSECGSPD+FPDIVVSVAVAPPPGHGG AP RRRPMKS HGD EVGII Sbjct: 1 MGSSGVNHGMARVGAGGERGGGDPPSPSAGRTELASEGSFAERRHGREKGSAVAAKQRGXXXXXXXMGETTERKDTGHAHAHNAVGDYDXXXXXXXXXEPVIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSSTSDVVSTAAMAGGRWQRSISNLSAADGQDGGGHTATTAGITITAGPEMCPEGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRYGMTSCSECGSPDDFPDIVVSVAVAPPPGHGGGAPARRRPMKSAHGDGEVGII 278
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A1V9ZY28_9STRA (Aspartyl protease family A01A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY28_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.390e-33 Identity = 78/186 (41.94%), Postives = 110/186 (59.14%), Query Frame = 1 Query: 304 RHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 RH N + LEN NVQY G G PPQ + ++FDTGSSDTW+P +GCTSCG+H+ FD SST KF + Y SG V G + ++++ +G V V G+V + + +Q F ADG+VGLAF S++ T P+ F L+Q+ ++F+ Y+TP P + GS + GGYDL +V Sbjct: 26 RHLNASNIPEIPLENYGNVQYVGRIAFGTPPQNLSVVFDTGSSDTWIPGIGCTSCGVHAAFDYSESSTFEDTTEKFIDAYGSGEVGGVIAQDTIGMGPFQVNNVRFGVVTEETRSLQMFIADGLVGLAFESLAKI--TRPT---LFSMLIQDN-PSLENMFAFYMTPDPTRLGSELHIGGYDLSIV 205
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A6A4ZQ35_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZQ35_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.840e-33 Identity = 75/177 (42.37%), Postives = 103/177 (58.19%), Query Frame = 1 Query: 331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 RV L+N NVQY G+ G+PPQ + ++FDTGSSDTW+P + CT CGLHS FD SST KF + Y SG V G + +++ G V V G+V + + + F ADG+VGL F S++ P+ ST L Q ++F++Y+T PNQ GS + GGYDL +V Sbjct: 33 RVRLQNYGNVQYVGELSFGSPPQVLTVVFDTGSSDTWIPGMSCTECGLHSAFDYTQSSTFQDTHEKFLDSYGSGEVGGVIGVDTIGFGPFVVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISR--PTLFST----LAAQNADVNNMFAMYMTAEPNQDGSELHLGGYDLSMV 203
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: W4G0A3_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0A3_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.370e-33 Identity = 76/177 (42.94%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 RV L+N NVQY G+ G+PPQ + ++FDTGSSDTW+P + CT CGLHS FD SST KF + Y SG V G + +++ G V V G+V + + + F ADG+VGL F S++ P+ ST L Q G ++F++Y+T PNQ GS + GGYDL +V Sbjct: 61 RVQLQNYGNVQYVGELSFGSPPQVLTVVFDTGSSDTWIPGMSCTECGLHSAFDYTQSSTFQDTHEKFLDSYGSGEVGGVIGVDTIGFGPFVVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISR--PTLFST----LAAQNAGVNNMFAMYMTAEPNQDGSELHLGGYDLSMV 231
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: T0R407_SAPDV (Peptidase A1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R407_SAPDV) HSP 1 Score: 142 bits (357), Expect = 1.630e-32 Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 1 Query: 334 VLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 V LEN NVQY G+ G+P Q + ++FDTGSSDTWVP++ CT+CG+H+ FD SST + +F + Y SG+V G + +++ +G + K G+V + + ++ F ADG+VGLAF S++ T P+ F QL+Q+ G++F+ Y+TP P GS + GGYDL +V Sbjct: 38 VPLENYGNVQYVGELAFGSPQQNLSVVFDTGSSDTWVPSIDCTTCGVHAAFDAGLSSTYHSANEQFMDAYGSGAVRGVIGVDTIGLGPFTIPKARFGVVTSETKALELFIADGLVGLAFESLAKI--TRPT---LFSQLIQDN-PKLGNMFAFYMTPDPTTLGSQLHLGGYDLSVV 207
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A6G0XMZ7_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMZ7_9STRA) HSP 1 Score: 141 bits (355), Expect = 3.660e-32 Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1 Query: 331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 R+ L+N NVQY G+ G PPQ + ++FDTGSSDTW+P + CTSCG+H FD S+T KF + Y SG V G + +++ G V+ V G+V + + ++ F ADG+VGL F S++ T P+ ST VQ Q G++F+VY++ P + GS + GGYDL +V Sbjct: 45 RLPLQNYGNVQYVGELSFGTPPQVLTVVFDTGSSDTWIPGISCTSCGMHEDFDYTQSTTFQDTREKFLDSYGSGEVGGVIGIDTIGFGPFNVENVRFGVVTEETESLEMFIADGLVGLGFESLAKI--TRPTLFSTLVQ----QNDAVGNMFAVYMSAEPYKTGSELHLGGYDLSMV 215
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A1V9Z503_9STRA (Aspartyl protease family A01A n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z503_9STRA) HSP 1 Score: 140 bits (352), Expect = 6.880e-32 Identity = 71/176 (40.34%), Postives = 106/176 (60.23%), Query Frame = 1 Query: 334 VLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 + LEN NVQY G G PPQ + ++FDTGSSDTW+P + CTSCG+H+ FD AS + + KF + Y SG V G + +++ IG V+ G+V + + ++ F ADG+VGLAF S++ S+ + F QL+ + G++F+ Y+TP P + GS + GGYDL + Sbjct: 34 IPLENYGNVQYVGSIAFGEPPQNLSVVFDTGSSDTWIPGLDCTSCGVHATFDYSASPSFIDTEEKFIDAYGSGEVGGVIGIDTIGIGPFTVRNARFGVVTEETRALEMFIADGLVGLAFESLAKI-----SRPTLFAQLILDN-PDLGNMFAFYMTPDPTKLGSELHLGGYDLSVA 203
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A024UDB4_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDB4_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.770e-31 Identity = 71/177 (40.11%), Postives = 99/177 (55.93%), Query Frame = 1 Query: 331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 RV L+N NVQY G+ G+PPQ + ++FDTGSSDTW+P + C CG HS FD S+T + KF + Y SG V G V +++ G V V G+V + + + F ADG+VGL F S++ T L F ++F++Y+T PNQ GS + GGYDL +V Sbjct: 62 RVKLQNYGNVQYVGELSFGSPPQMLTVVFDTGSSDTWIPGISCAECGFHSAFDYTQSTTFIDTHEKFLDSYGSGEVGGVVGVDTIGFGPFRVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISRP------TLFTTLASHFTEVRNMFAMYMTAEPNQEGSELHLGGYDLSVV 232
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A5D6Y386_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y386_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.640e-31 Identity = 74/177 (41.81%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861 RV L N NVQY G GNPPQ M ++FDTGSSDTWVP C SCG HS F S+T + KF + Y SGSV G++ +++ +G V+ V+ G+V + +++Q F ADG+ GL F ++ S+ + F QL Q+ D+F+ +LTP + GS + GGYDL +V Sbjct: 60 RVPLRNYGNVQYIGRVAFGNPPQPMDMVFDTGSSDTWVPGDSCASCGAHSRFQHALSTTFLDTQAKFFDAYGSGSVAGTIAVDTITLGAFRVESVKFGVVSEETEKLQVFIADGLFGLGFDGLAHI-----SRPTLFAQLAQQN-PEIDDMFAFFLTPEAYERGSELHIGGYDLSVV 230 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1006.81.1 >prot_Ecto-sp13_S_contig1006.81.1 ID=prot_Ecto-sp13_S_contig1006.81.1|Name=mRNA_Ecto-sp13_S_contig1006.81.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=704bp MIHSVSAFVAVCCMIAVEPAAPGAVLRADAGGSTTSGVLGLHQLQPDVTEback to top mRNA from alignment at Ecto-sp13_S_contig1006:946..4180- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1006.81.1 ID=mRNA_Ecto-sp13_S_contig1006.81.1|Name=mRNA_Ecto-sp13_S_contig1006.81.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1006:946..4180- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1006:946..4180- >mRNA_Ecto-sp13_S_contig1006.81.1 ID=mRNA_Ecto-sp13_S_contig1006.81.1|Name=mRNA_Ecto-sp13_S_contig1006.81.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2112bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1006:946..4180- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |