mRNA_Ecto-sp13_S_contig100571.80.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A1I9LVU6_9PHAE (50S ribosomal protein L5, chloroplastic n=14 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVU6_9PHAE) HSP 1 Score: 177 bits (448), Expect = 7.030e-55 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT 264
LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT
Sbjct: 99 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT 186
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A0R6LUT7_UNDPI (50S ribosomal protein L5, chloroplastic n=24 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6LUT7_UNDPI) HSP 1 Score: 170 bits (431), Expect = 2.700e-52 Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LRS KMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKG NISIVTTA+TK EGIALLKEFGFPLTD
Sbjct: 99 LRSKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAQTKIEGIALLKEFGFPLTD 187
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A141BSM9_9PHAE (50S ribosomal protein L5, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM9_9PHAE) HSP 1 Score: 167 bits (424), Expect = 3.130e-51 Identity = 81/89 (91.01%), Postives = 87/89 (97.75%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LR+ KMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEI+YENVDQI+GLNISIVTTAKTK+EG+ALLKEFGFPL +
Sbjct: 99 LRNKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEINYENVDQIRGLNISIVTTAKTKSEGVALLKEFGFPLNE 187
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A8F0F770_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F770_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.560e-50 Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LR+ KMY FLEKL+HLVLPRIRDFRGLS KGFDR GNYNFGL+EQLVFPEI+YENVDQIKG NISIVTTAKTKNEGIALLKEFGFPLTD
Sbjct: 99 LRNNKMYTFLEKLVHLVLPRIRDFRGLSSKGFDREGNYNFGLQEQLVFPEINYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 187
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A2R4QQ29_9PHAE (50S ribosomal protein L5, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ29_9PHAE) HSP 1 Score: 164 bits (416), Expect = 5.150e-50 Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPL 261
LR+ KMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISY++VDQ+KGLNISIVTTA+TK+EGIALLKEFGFPL
Sbjct: 99 LRNKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYDSVDQVKGLNISIVTTAQTKSEGIALLKEFGFPL 185
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A8E6D6M4_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6M4_9PHAE) HSP 1 Score: 161 bits (408), Expect = 8.460e-49 Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LR++KMY FLEKLIHLVLPRIRDFRGLSLKGFDR GNYNFGL+EQL FPEI+YE++DQ++G NISIVTTAKT+NEGIALLKEFGFPLTD
Sbjct: 99 LRNSKMYIFLEKLIHLVLPRIRDFRGLSLKGFDREGNYNFGLREQLAFPEINYESIDQLRGFNISIVTTAKTRNEGIALLKEFGFPLTD 187
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A2I4Q2J9_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J9_9PHAE) HSP 1 Score: 159 bits (401), Expect = 9.790e-48 Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LR TKMY FLEKLIHLVLPRIRDFRGLS K FDRNGNY+FGL+EQLVFPEISYENVDQI+GLNISIVTTAKT+ EGIALLKEFGFPL +
Sbjct: 99 LRQTKMYTFLEKLIHLVLPRIRDFRGLSTKNFDRNGNYHFGLQEQLVFPEISYENVDQIRGLNISIVTTAKTQAEGIALLKEFGFPLIE 187
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: B7T1X2_VAULI (50S ribosomal protein L5, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X2_VAULI) HSP 1 Score: 151 bits (381), Expect = 1.010e-44 Identity = 70/89 (78.65%), Postives = 84/89 (94.38%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LR KMY+FLEKLIHLVLPRIRDFRGLS+KGFD+NGN+NFG++EQLVFPEI+Y+ ++Q +GLNI+IV+TAKTK+EGIALLKEFGFPL D
Sbjct: 97 LRGNKMYSFLEKLIHLVLPRIRDFRGLSIKGFDKNGNFNFGIREQLVFPEINYDIINQTRGLNITIVSTAKTKDEGIALLKEFGFPLID 185
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A7S6ZPC4_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPC4_9STRA) HSP 1 Score: 149 bits (376), Expect = 6.700e-44 Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
LR KMY FLEKLIHLVLPR+RDFRGLS KGFD+ GNYNFGL+EQLVFPEI+Y++VD+ +G NISIVTTAKTK+EGI+LLKEFGFPL D
Sbjct: 102 LRKLKMYDFLEKLIHLVLPRVRDFRGLSTKGFDKFGNYNFGLQEQLVFPEINYDDVDKTRGFNISIVTTAKTKDEGISLLKEFGFPLVD 190
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A8E5BGR0_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BGR0_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.180e-39 Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 1 Query: 1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPL 261
LR+ KMY FL KLIHLVLPRIRDFRGLS+KGFDR GNYNFGLKEQLVFPEI+YE+V +I G NIS+VTTA+T+ EG LL++FGFP+
Sbjct: 98 LRNKKMYEFLTKLIHLVLPRIRDFRGLSIKGFDRKGNYNFGLKEQLVFPEINYEDVKKINGFNISLVTTAQTEVEGKYLLEQFGFPI 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100571.80.1 >prot_Ecto-sp13_S_contig100571.80.1 ID=prot_Ecto-sp13_S_contig100571.80.1|Name=mRNA_Ecto-sp13_S_contig100571.80.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp MYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENback to top mRNA from alignment at Ecto-sp13_S_contig100571:208..477- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100571.80.1 ID=mRNA_Ecto-sp13_S_contig100571.80.1|Name=mRNA_Ecto-sp13_S_contig100571.80.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:208..477- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100571:208..477- >mRNA_Ecto-sp13_S_contig100571.80.1 ID=mRNA_Ecto-sp13_S_contig100571.80.1|Name=mRNA_Ecto-sp13_S_contig100571.80.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:208..477- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |