mRNA_Ecto-sp13_S_contig100490.75.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 1.690e-8 Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 Query: 43 TAVQFLSSEGHLYSTIDDDHYRSTET 120
TAVQFLSSEGHLYSTIDDDHYRSTET
Sbjct: 304 TAVQFLSSEGHLYSTIDDDHYRSTET 329
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A2I0LS00_COLLI (Replication protein A2, 32kDa n=1 Tax=Columba livia TaxID=8932 RepID=A0A2I0LS00_COLLI) HSP 1 Score: 51.6 bits (122), Expect = 1.290e-6 Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
+ AV+FLSSEGH+YST+DDDHY+ST+T
Sbjct: 184 KQAVEFLSSEGHIYSTVDDDHYKSTDT 210
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7K4IV34_GEOCA (RFA2 protein (Fragment) n=1 Tax=Geococcyx californianus TaxID=8947 RepID=A0A7K4IV34_GEOCA) HSP 1 Score: 50.8 bits (120), Expect = 1.420e-6 Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTE 117
R AV+FLSSEGH+YST+DDDHY+ST+
Sbjct: 132 RQAVEFLSSEGHIYSTVDDDHYKSTD 157
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A1S3HW85_LINUN (replication protein A 32 kDa subunit-A-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HW85_LINUN) HSP 1 Score: 50.8 bits (120), Expect = 1.500e-6 Identity = 19/27 (70.37%), Postives = 27/27 (100.00%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
R+A++FLSSEGH+YSTIDDDHY++T++
Sbjct: 137 RSAIEFLSSEGHIYSTIDDDHYKATDS 163
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: UPI0004F0E448 (replication protein A 32 kDa subunit n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0E448) HSP 1 Score: 50.8 bits (120), Expect = 1.730e-6 Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
+ AV FLSSEGH+YST+DDDHY+ST+T
Sbjct: 147 KQAVDFLSSEGHIYSTVDDDHYKSTDT 173
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A1V4JJB4_PATFA (Replication protein A subunit n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JJB4_PATFA) HSP 1 Score: 51.6 bits (122), Expect = 1.760e-6 Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
+ AV+FLSSEGH+YST+DDDHY+ST+T
Sbjct: 244 KQAVEFLSSEGHIYSTVDDDHYKSTDT 270
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7M7NK50_STRPU (RPA_C domain-containing protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7NK50_STRPU) HSP 1 Score: 51.2 bits (121), Expect = 2.500e-6 Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
R AV+FLSSEGH+YSTIDDDH++STE+
Sbjct: 258 RKAVEFLSSEGHIYSTIDDDHFKSTES 284
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7M7NQ31_STRPU (RPA_C domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NQ31_STRPU) HSP 1 Score: 51.2 bits (121), Expect = 2.500e-6 Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
R AV+FLSSEGH+YSTIDDDH++STE+
Sbjct: 258 RKAVEFLSSEGHIYSTIDDDHFKSTES 284
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7L0WYG2_ALELA (RFA2 protein (Fragment) n=1 Tax=Alectura lathami TaxID=81907 RepID=A0A7L0WYG2_ALELA) HSP 1 Score: 49.7 bits (117), Expect = 2.690e-6 Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTE 117
+ AV+FLSSEGH+YST+DDDHY+ST+
Sbjct: 107 KQAVEFLSSEGHIYSTVDDDHYKSTD 132
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: UPI000528D546 (replication protein A 32 kDa subunit-like n=1 Tax=Eurypyga helias TaxID=54383 RepID=UPI000528D546) HSP 1 Score: 49.7 bits (117), Expect = 2.690e-6 Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 1 Query: 40 RTAVQFLSSEGHLYSTIDDDHYRSTE 117
+ AV+FLSSEGH+YST+DDDHY+ST+
Sbjct: 107 KQAVEFLSSEGHIYSTVDDDHYKSTD 132 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100490.75.1 >prot_Ecto-sp13_S_contig100490.75.1 ID=prot_Ecto-sp13_S_contig100490.75.1|Name=mRNA_Ecto-sp13_S_contig100490.75.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp PGCPLYIACFLCCRTAVQFLSSEGHLYSTIDDDHYRSTET*back to top mRNA from alignment at Ecto-sp13_S_contig100490:222..344+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100490.75.1 ID=mRNA_Ecto-sp13_S_contig100490.75.1|Name=mRNA_Ecto-sp13_S_contig100490.75.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100490:222..344+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100490:222..344+ >mRNA_Ecto-sp13_S_contig100490.75.1 ID=mRNA_Ecto-sp13_S_contig100490.75.1|Name=mRNA_Ecto-sp13_S_contig100490.75.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100490:222..344+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |