mRNA_Ecto-sp13_S_contig100473.72.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig100473.72.1
Unique Name	mRNA_Ecto-sp13_S_contig100473.72.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig100473.72.1 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.470e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1

Query:    1 LQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 141
            LQQAAGQAAEYVKRLEQTNYALSVRVQAMG+SGASDFMGGQRPPDVF
Sbjct:  202 LQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 248

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig100473.72.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig100473.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LLL4_ECTSI	2.470e-21	97.87	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig100473	contig	Ecto-sp13_S_contig100473:369..509 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	141
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Cds size	141

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462503.4127505-CDS-Ecto-sp13_S_contig100473:368..509	1681462503.4127505-CDS-Ecto-sp13_S_contig100473:368..509	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig100473 369..509 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig100473.72.1	prot_Ecto-sp13_S_contig100473.72.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig100473 369..509 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig100473:369..509+
coding sequence from alignment at Ecto-sp13_S_contig100473:369..509+

protein sequence of mRNA_Ecto-sp13_S_contig100473.72.1

>prot_Ecto-sp13_S_contig100473.72.1 ID=prot_Ecto-sp13_S_contig100473.72.1|Name=mRNA_Ecto-sp13_S_contig100473.72.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
LQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF

mRNA from alignment at Ecto-sp13_S_contig100473:369..509+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig100473.72.1 ID=mRNA_Ecto-sp13_S_contig100473.72.1|Name=mRNA_Ecto-sp13_S_contig100473.72.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100473:369..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCAGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCA
GACGAACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAGCTCGGGGG
CGAGCGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100473:369..509+

>mRNA_Ecto-sp13_S_contig100473.72.1 ID=mRNA_Ecto-sp13_S_contig100473.72.1|Name=mRNA_Ecto-sp13_S_contig100473.72.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100473:369..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCAGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCA
GACGAACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAGCTCGGGGG
CGAGCGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTT