Homology
BLAST of mRNA_Ecto-sp13_S_contig10046.69.1 vs. uniprot
Match: A0A6H5KFU5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU5_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.320e-17 Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 1 Query: 262 CLLSGARLCGRTSECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXX----CGSRRAGLCCSWLSSLLLGWDWLPIATSGAPVAG 501
C +GARLCGR SECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXX C SRRAG CCSWLSSLLLGWDWLPIATSGAPVAG
Sbjct: 16 CRRTGARLCGRNSECDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRSRRAGPCCSWLSSLLLGWDWLPIATSGAPVAG 99
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 623 |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Cds size | 621 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462503.2346234-CDS-Ecto-sp13_S_contig10046:2575..2849 | 1681462503.2346234-CDS-Ecto-sp13_S_contig10046:2575..2849 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10046 2576..2849 + |
| 1681462503.244927-CDS-Ecto-sp13_S_contig10046:3166..3373 | 1681462503.244927-CDS-Ecto-sp13_S_contig10046:3166..3373 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10046 3167..3373 + |
| 1681462503.2552917-CDS-Ecto-sp13_S_contig10046:4358..4498 | 1681462503.2552917-CDS-Ecto-sp13_S_contig10046:4358..4498 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10046 4359..4498 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10046.69.1 >prot_Ecto-sp13_S_contig10046.69.1 ID=prot_Ecto-sp13_S_contig10046.69.1|Name=mRNA_Ecto-sp13_S_contig10046.69.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
CHSEAWSRVLLFFRGVAVPCSLELAAVTLIRCPFNAGNDALLLPHASRVA
HHVEYGTHYGHGCVCVRARESCGTPPPEVPSEAPPVECLLSGARLCGRTS
ECDDGNGGCCCCCGCERPETNGGNNSNGGGGSSCGSRRAGLCCSWLSSLL
LGWDWLPIATSGAPVAGGGGQALGGSASAAIPRHSSGGTGRGGGGSGGAV
GDMAVAL back to topmRNA from alignment at Ecto-sp13_S_contig10046:2576..4499+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10046.69.1 ID=mRNA_Ecto-sp13_S_contig10046.69.1|Name=mRNA_Ecto-sp13_S_contig10046.69.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10046:2576..4499+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCATTCGGAGGCTTGGAGTCGGGTTCTTTTGTTCTTTCGTGGCGTCGC
CGTTCCGTGCTCGTTGGAGCTAGCAGCGGTTACTCTCATTCGTTGTCCGT
TCAATGCCGGCAACGATGCATTACTGCTGCCGCATGCGAGCCGTGTGGCG
CACCATGTCGAATACGGGACTCACTACGGCCATGGTTGTGTCTGCGTTCG
CGCTCGTGAATCATGCGGTACACCCCCACCGGAAGTACCATCTGAAGCCC
CCCCCGTCGAGTGCTTGTTGTCAGGTTTGAGCTATCAGATCGGTGCTAAA
CGTTGGCTTGGTGATTTTTTTTTGTGGTAGGTATGCATCGATATGGTGCG
CTGCGAGCGCTCCTTTCTCACCATGCCACGGAAAACGACAGCACCAATGC
GTTGTCATGGCCAACAACGTCAGCAACATCGTGGCTATTTCTAGCTGGGG
TTTTCTCCATGCGAGGGGCCGAAAAATCTCTAGACCCCGCGCGCCCCACA
GTCGTGTGCGCTACTGCTGTGACGACACATGAGATGACGCGCAATCGATC
TTCTGAAACGTTCGAGCTTTTCGACGTGGTTTATTTGCCAGGTGCTCGCC
TCTGCGGCCGCACCAGCGAGTGCGATGATGGTAACGGCGGGTGCTGCTGC
TGCTGCGGCTGCGAGAGGCCGGAAACCAATGGCGGTAACAACAGCAACGG
CGGCGGCGGCAGCAGCTGCGGTAGTCGTCGCGCCGGTCTGTGCTGCAGCT
GGCTGTCGTCGTTGCTCCTAGGCTGGGATTGGCTCCCCATCGCTACGTGT
GAGTGAAGGACGGCACGAATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTGGACGTCACATTGAGAACCGTTCCGGTCTCCGCTCAGTATTCCTTGT
AGTGCCCGCACTTTTCCATCTGACGCGAGAGTATTTGAAGAGACACGAAG
ATGTTTTCCATCTTCTTAACTGTGAAGAACGTACGGTGTACTTCAGGCGG
AGACGTACAATCGGTGGTCAATAAATGGGAAAGCAGAAACTGCGTTTCGG
GGTCATTGGTTGGGGGCGGGTATGCTCTGTGGGGCGATGTCGATGCATCG
GTTCAGCAGGAGTTGGTAACTACGGACGGATGTCGTCGCGTTTGTTTCCT
CCGCGGTTACCCACACGCCTGAACAGACGGGTGTGTCCAAGAGAGCGAAG
GAAGGTTTTTTCCCCATGGCGCATCATCGCATCACACATCTACCCGCGTC
GTTTTTTGCATCGTGTTGGCCTCTCTTTCGTTACGCACGCTCGTTCTCTC
TGTCTCTCTCTCTCTCTCTCTCTCTCTCGAACGCCACACGTTACAGACTG
GTCTGAATGCTTTTGTGGTGTTCTTGCGCCCTGCCCTACTCCGCTTACAT
TTGTTTATCCCCGGCGGCGCCCAAATCCCTACCCCTCACTCCGCATATCG
CGGCTAAAGAACATGCCTTATCCAACACGGACCGACAACCCCCCTTGGCC
CGTCAAAATTCCGAGGTAGCCCGAGCGTCGTGTCACTTGGACTTGGATGA
GGCGGCAAAAGAACTAACCTCTCCAAACACCGACCAAACTTGGAACCTGC
ATTTTTTGTACACTTCAAGGAATGAAGATAAGCTAAAGCAACCGTGCACC
AAATGAACACATGGTCAGAGGATATTTATACACTCCCTTCGTTTATAACA
TAAACTCCTCTCAATTTGTGCTCCGTATATATATTTTGGCTCATTTGTCT
CCCTTGGCCCGTCAAAACATTTCGGGACGGCAGCCGGGGCTCCTGTAGCC
GGAGGCGGCGGGCAGGCCCTGGGGGGAAGCGCCTCCGCAGCAATTCCTCG
CCACTCGTCGGGCGGCACCGGTAGAGGCGGCGGCGGCAGCGGGGGGGCAG
TTGGTGATATGGCGGTGGCCTTGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10046:2576..4499+ >mRNA_Ecto-sp13_S_contig10046.69.1 ID=mRNA_Ecto-sp13_S_contig10046.69.1|Name=mRNA_Ecto-sp13_S_contig10046.69.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10046:2576..4499+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCATTCGGAGGCTTGGAGTCGGGTTCTTTTGTTCTTTCGTGGCGTCGC
CGTTCCGTGCTCGTTGGAGCTAGCAGCGGTTACTCTCATTCGTTGTCCGT
TCAATGCCGGCAACGATGCATTACTGCTGCCGCATGCGAGCCGTGTGGCG
CACCATGTCGAATACGGGACTCACTACGGCCATGGTTGTGTCTGCGTTCG
CGCTCGTGAATCATGCGGTACACCCCCACCGGAAGTACCATCTGAAGCCC
CCCCCGTCGAGTGCTTGTTGTCAGGTGCTCGCCTCTGCGGCCGCACCAGC
GAGTGCGATGATGGTAACGGCGGGTGCTGCTGCTGCTGCGGCTGCGAGAG
GCCGGAAACCAATGGCGGTAACAACAGCAACGGCGGCGGCGGCAGCAGCT
GCGGTAGTCGTCGCGCCGGTCTGTGCTGCAGCTGGCTGTCGTCGTTGCTC
CTAGGCTGGGATTGGCTCCCCATCGCTACGTCCGGGGCTCCTGTAGCCGG
AGGCGGCGGGCAGGCCCTGGGGGGAAGCGCCTCCGCAGCAATTCCTCGCC
ACTCGTCGGGCGGCACCGGTAGAGGCGGCGGCGGCAGCGGGGGGGCAGTT
GGTGATATGGCGGTGGCCTTG back to top
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